Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RNU6-1080P-201ENST00000383982 107 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 RNU11-3P-201ENST00000391111 133 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 MTND2P29-201ENST00000438595 412 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.18□□□□□ -2.06
VSX1Q9NZR4 AC233266.1-201ENST00000454518 96 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 AL049830.1-201ENST00000468034 425 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 OR9P1P-201ENST00000496431 281 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 SNORD77.4-201ENST00000516158 81 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.18□□□□□ -2.06
VSX1Q9NZR4 RPL23AP91-201ENST00000569211 455 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 SNORD53-201ENST00000579969 78 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 DNAJC19P2-201ENST00000593340 302 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 SNORD14A-201ENST00000606526 91 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 AL137847.3-201ENST00000611521 109 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 AC242852.1-201ENST00000612151 96 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 U1.36-201ENST00000620684 176 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 AC244015.1-201ENST00000622301 99 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 AC012640.5-201ENST00000623897 319 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 AC016717.2-201ENST00000609089 5141 ntBASIC2.18□□□□□ -2.06
VSX1Q9NZR4 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.17□□□□□ -2.06
VSX1Q9NZR4 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.17□□□□□ -2.06
VSX1Q9NZR4 SNORD115-3-201ENST00000363100 82 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 SNORD116-18-201ENST00000383961 92 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 Y_RNA.432-201ENST00000384087 111 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 MIR518A2-201ENST00000384966 87 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
VSX1Q9NZR4 HMGN2P39-201ENST00000398005 273 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 AC099677.2-201ENST00000436385 175 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 RPS27P1-201ENST00000450552 247 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 SNRPGP8-201ENST00000454064 226 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.17□□□□□ -2.06
VSX1Q9NZR4 SNORD11-201ENST00000459124 84 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 RNU6-406P-201ENST00000516470 107 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 RNU6-197P-201ENST00000516680 100 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 RNU2-56P-201ENST00000516826 190 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 AC078899.2-201ENST00000595282 212 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 AP001485.1-201ENST00000604799 199 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 AC067747.1-201ENST00000608026 250 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 Y_RNA.778-201ENST00000620203 90 ntBASIC2.17□□□□□ -2.06
VSX1Q9NZR4 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.17□□□□□ -2.06
VSX1Q9NZR4 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.16□□□□□ -2.06
VSX1Q9NZR4 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VSX1Q9NZR4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.16□□□□□ -2.06
VSX1Q9NZR4 Y_RNA.8-201ENST00000362353 102 ntBASIC2.16□□□□□ -2.06
VSX1Q9NZR4 RNU6-525P-201ENST00000363685 104 ntBASIC2.16□□□□□ -2.06
VSX1Q9NZR4 Y_RNA.267-201ENST00000364679 109 ntBASIC2.16□□□□□ -2.06
VSX1Q9NZR4 RNA5SP482-201ENST00000391269 118 ntBASIC2.16□□□□□ -2.06
VSX1Q9NZR4 RNA5SP270-201ENST00000411361 118 ntBASIC2.16□□□□□ -2.06
VSX1Q9NZR4 TMSB4XP3-201ENST00000445144 114 ntBASIC2.16□□□□□ -2.06
VSX1Q9NZR4 SNORA28-201ENST00000606769 126 ntBASIC2.16□□□□□ -2.06
VSX1Q9NZR4 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
VSX1Q9NZR4 MIR21-201ENST00000362134 72 ntBASIC2.15□□□□□ -2.07
VSX1Q9NZR4 SNORD45.3-201ENST00000363836 72 ntBASIC2.15□□□□□ -2.07
VSX1Q9NZR4 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
VSX1Q9NZR4 AL359511.1-201ENST00000402970 211 ntBASIC2.15□□□□□ -2.07
VSX1Q9NZR4 RNA5SP184-201ENST00000411071 108 ntBASIC2.15□□□□□ -2.07
VSX1Q9NZR4 AC006461.1-201ENST00000412637 326 ntBASIC2.15□□□□□ -2.07
VSX1Q9NZR4 BX510359.4-201ENST00000423750 193 ntBASIC2.15□□□□□ -2.07
VSX1Q9NZR4 FTH1P12-201ENST00000432137 551 ntBASIC2.15□□□□□ -2.07
VSX1Q9NZR4 RNU6-1291P-201ENST00000516591 104 ntBASIC2.15□□□□□ -2.07
VSX1Q9NZR4 MIR378D2-201ENST00000580636 98 ntBASIC2.15□□□□□ -2.07
VSX1Q9NZR4 AC022202.1-201ENST00000613515 211 ntBASIC2.15□□□□□ -2.07
VSX1Q9NZR4 CTSLP2-204ENST00000629029 392 ntBASIC2.15□□□□□ -2.07
VSX1Q9NZR4 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.15□□□□□ -2.07
VSX1Q9NZR4 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.15□□□□□ -2.07
VSX1Q9NZR4 AC245060.5-201ENST00000610778 3293 ntBASIC2.15□□□□□ -2.07
VSX1Q9NZR4 Y_RNA.253-201ENST00000364562 112 ntBASIC2.14□□□□□ -2.07
VSX1Q9NZR4 RNU6-597P-201ENST00000365620 102 ntBASIC2.14□□□□□ -2.07
VSX1Q9NZR4 Y_RNA.488-201ENST00000384403 102 ntBASIC2.14□□□□□ -2.07
VSX1Q9NZR4 MIR196B-201ENST00000384852 84 ntBASIC2.14□□□□□ -2.07
VSX1Q9NZR4 SNRPGP10-201ENST00000432323 225 ntBASIC2.14□□□□□ -2.07
VSX1Q9NZR4 RPS27P21-201ENST00000486977 252 ntBASIC2.14□□□□□ -2.07
VSX1Q9NZR4 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.14□□□□□ -2.07
VSX1Q9NZR4 AL049861.1-201ENST00000603130 150 ntBASIC2.14□□□□□ -2.07
VSX1Q9NZR4 AC097639.2-201ENST00000603159 172 ntBASIC2.14□□□□□ -2.07
VSX1Q9NZR4 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.14□□□□□ -2.07
VSX1Q9NZR4 MIR1291-201ENST00000627649 87 ntBASIC2.14□□□□□ -2.07
VSX1Q9NZR4 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
VSX1Q9NZR4 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
VSX1Q9NZR4 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.13□□□□□ -2.07
VSX1Q9NZR4 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
VSX1Q9NZR4 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
VSX1Q9NZR4 SNORA3A-201ENST00000364113 130 ntBASIC2.13□□□□□ -2.07
VSX1Q9NZR4 RNU6-704P-201ENST00000364162 103 ntBASIC2.13□□□□□ -2.07
VSX1Q9NZR4 Y_RNA.393-201ENST00000383936 102 ntBASIC2.13□□□□□ -2.07
VSX1Q9NZR4 Y_RNA.521-201ENST00000384560 114 ntBASIC2.13□□□□□ -2.07
VSX1Q9NZR4 SNORA48.1-201ENST00000390879 135 ntBASIC2.13□□□□□ -2.07
VSX1Q9NZR4 MIR1283-2-201ENST00000408621 87 ntBASIC2.13□□□□□ -2.07
VSX1Q9NZR4 RNU2-70P-201ENST00000410718 179 ntBASIC2.13□□□□□ -2.07
VSX1Q9NZR4 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.13□□□□□ -2.07
VSX1Q9NZR4 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.13□□□□□ -2.07
VSX1Q9NZR4 SNORD116-25-201ENST00000516517 92 ntBASIC2.13□□□□□ -2.07
VSX1Q9NZR4 RNA5SP148-201ENST00000516527 94 ntBASIC2.13□□□□□ -2.07
VSX1Q9NZR4 MIR514B-201ENST00000516774 80 ntBASIC2.13□□□□□ -2.07
VSX1Q9NZR4 MTND5P41-201ENST00000517498 206 ntBASIC2.13□□□□□ -2.07
VSX1Q9NZR4 AC084364.2-201ENST00000546924 395 ntBASIC2.13□□□□□ -2.07
VSX1Q9NZR4 MIR548X2-201ENST00000579776 100 ntBASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 167.4 ms