Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.98
NKX2-4Q9H2Z4 AC008264.2-201ENST00000610193 3731 ntBASIC2.7□□□□□ -1.98
NKX2-4Q9H2Z4 RNU6-1164P-201ENST00000364428 107 ntBASIC2.7□□□□□ -1.98
NKX2-4Q9H2Z4 Y_RNA.393-201ENST00000383936 102 ntBASIC2.7□□□□□ -1.98
NKX2-4Q9H2Z4 RNU6-768P-201ENST00000384683 107 ntBASIC2.7□□□□□ -1.98
NKX2-4Q9H2Z4 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.7□□□□□ -1.98
NKX2-4Q9H2Z4 SNORD77.4-201ENST00000516158 81 ntBASIC2.7□□□□□ -1.98
NKX2-4Q9H2Z4 RNA5SP281-201ENST00000516504 135 ntBASIC2.7□□□□□ -1.98
NKX2-4Q9H2Z4 MIR3646-201ENST00000578301 84 ntBASIC2.7□□□□□ -1.98
NKX2-4Q9H2Z4 MIR378D2-201ENST00000580636 98 ntBASIC2.7□□□□□ -1.98
NKX2-4Q9H2Z4 AC022202.1-201ENST00000613515 211 ntBASIC2.7□□□□□ -1.98
NKX2-4Q9H2Z4 ZNF702P-202ENST00000434269 1966 ntBASIC2.7□□□□□ -1.98
NKX2-4Q9H2Z4 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
NKX2-4Q9H2Z4 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
NKX2-4Q9H2Z4 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
NKX2-4Q9H2Z4 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.7□□□□□ -1.98
NKX2-4Q9H2Z4 Y_RNA.4-201ENST00000362333 112 ntBASIC2.69□□□□□ -1.98
NKX2-4Q9H2Z4 RNU6-484P-201ENST00000384016 107 ntBASIC2.69□□□□□ -1.98
NKX2-4Q9H2Z4 SNORA11.4-201ENST00000408823 129 ntBASIC2.69□□□□□ -1.98
NKX2-4Q9H2Z4 RNU2-70P-201ENST00000410718 179 ntBASIC2.69□□□□□ -1.98
NKX2-4Q9H2Z4 HMGN2P23-201ENST00000456759 269 ntBASIC2.69□□□□□ -1.98
NKX2-4Q9H2Z4 RPS26P45-201ENST00000471748 340 ntBASIC2.69□□□□□ -1.98
NKX2-4Q9H2Z4 HMGN1P7-201ENST00000491722 313 ntBASIC2.69□□□□□ -1.98
NKX2-4Q9H2Z4 MIR3605-201ENST00000583214 100 ntBASIC2.69□□□□□ -1.98
NKX2-4Q9H2Z4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.69□□□□□ -1.98
NKX2-4Q9H2Z4 MIR7111-201ENST00000619751 72 ntBASIC2.69□□□□□ -1.98
NKX2-4Q9H2Z4 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC2.69□□□□□ -1.98
NKX2-4Q9H2Z4 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 RNU1-58P-201ENST00000362413 163 ntBASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 Y_RNA.338-201ENST00000365320 114 ntBASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 RNU1-148P-201ENST00000384472 162 ntBASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 MIR548I2-201ENST00000408348 149 ntBASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 RPS29P6-201ENST00000438196 145 ntBASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 RN7SL75P-201ENST00000461926 281 ntBASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 OR9P1P-201ENST00000496431 281 ntBASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 AL163195.1-201ENST00000496941 348 ntBASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 RNA5SP272-201ENST00000516095 111 ntBASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 RNA5SP153-201ENST00000516498 76 ntBASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 AL358944.1-201ENST00000528537 144 ntBASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 MIR4506-201ENST00000584693 77 ntBASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 AC010332.2-201ENST00000613083 1904 ntBASIC2.68□□□□□ -1.98
NKX2-4Q9H2Z4 AC093831.2-201ENST00000624393 3427 ntBASIC2.67□□□□□ -1.98
NKX2-4Q9H2Z4 Y_RNA.253-201ENST00000364562 112 ntBASIC2.67□□□□□ -1.98
NKX2-4Q9H2Z4 SNORA26-201ENST00000391286 122 ntBASIC2.67□□□□□ -1.98
NKX2-4Q9H2Z4 AL359511.1-201ENST00000402970 211 ntBASIC2.67□□□□□ -1.98
NKX2-4Q9H2Z4 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.67□□□□□ -1.98
NKX2-4Q9H2Z4 SNRPGP10-201ENST00000432323 225 ntBASIC2.67□□□□□ -1.98
NKX2-4Q9H2Z4 RNU6-126P-201ENST00000516685 103 ntBASIC2.67□□□□□ -1.98
NKX2-4Q9H2Z4 SNORA31.26-201ENST00000517250 137 ntBASIC2.67□□□□□ -1.98
NKX2-4Q9H2Z4 AL160236.1-201ENST00000556317 195 ntBASIC2.67□□□□□ -1.98
NKX2-4Q9H2Z4 Pinc.1-201ENST00000616452 154 ntBASIC2.67□□□□□ -1.98
NKX2-4Q9H2Z4 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.67□□□□□ -1.98
NKX2-4Q9H2Z4 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.67□□□□□ -1.98
NKX2-4Q9H2Z4 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.67□□□□□ -1.98
NKX2-4Q9H2Z4 SNORA40-201ENST00000388090 126 ntBASIC2.66□□□□□ -1.98
NKX2-4Q9H2Z4 Y_RNA.586-201ENST00000391146 98 ntBASIC2.66□□□□□ -1.98
NKX2-4Q9H2Z4 SNORA75.5-201ENST00000391291 81 ntBASIC2.66□□□□□ -1.98
NKX2-4Q9H2Z4 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.66□□□□□ -1.98
NKX2-4Q9H2Z4 RNA5SP385-201ENST00000515947 110 ntBASIC2.66□□□□□ -1.98
NKX2-4Q9H2Z4 RPPH1-2P-201ENST00000516688 293 ntBASIC2.66□□□□□ -1.98
NKX2-4Q9H2Z4 RNU7-149P-201ENST00000516739 59 ntBASIC2.66□□□□□ -1.98
NKX2-4Q9H2Z4 AP002004.2-201ENST00000531656 154 ntBASIC2.66□□□□□ -1.98
NKX2-4Q9H2Z4 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.66□□□□□ -1.98
NKX2-4Q9H2Z4 MIR4662B-201ENST00000579498 81 ntBASIC2.66□□□□□ -1.98
NKX2-4Q9H2Z4 AC005786.1-201ENST00000588553 154 ntBASIC2.66□□□□□ -1.98
NKX2-4Q9H2Z4 AC046143.2-201ENST00000609789 160 ntBASIC2.66□□□□□ -1.98
NKX2-4Q9H2Z4 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.66□□□□□ -1.98
NKX2-4Q9H2Z4 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.98
NKX2-4Q9H2Z4 RNU6-1138P-201ENST00000365359 106 ntBASIC2.65□□□□□ -1.99
NKX2-4Q9H2Z4 RNU6-597P-201ENST00000365620 102 ntBASIC2.65□□□□□ -1.99
NKX2-4Q9H2Z4 RNU6-257P-201ENST00000410238 98 ntBASIC2.65□□□□□ -1.99
NKX2-4Q9H2Z4 RNU6-588P-201ENST00000410281 105 ntBASIC2.65□□□□□ -1.99
NKX2-4Q9H2Z4 RN7SKP123-201ENST00000410732 291 ntBASIC2.65□□□□□ -1.99
NKX2-4Q9H2Z4 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.65□□□□□ -1.99
NKX2-4Q9H2Z4 AC099677.2-201ENST00000436385 175 ntBASIC2.65□□□□□ -1.99
NKX2-4Q9H2Z4 RNU2-56P-201ENST00000516826 190 ntBASIC2.65□□□□□ -1.99
NKX2-4Q9H2Z4 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.65□□□□□ -1.99
NKX2-4Q9H2Z4 MIR4658-201ENST00000584344 65 ntBASIC2.65□□□□□ -1.99
NKX2-4Q9H2Z4 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
NKX2-4Q9H2Z4 SNORA1B-201ENST00000362535 133 ntBASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 SNORA25.7-201ENST00000364375 127 ntBASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 Y_RNA.634-201ENST00000364811 113 ntBASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 RNU6-1117P-201ENST00000384525 104 ntBASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 SNORA20-201ENST00000384662 132 ntBASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 SNORA12.1-201ENST00000390873 148 ntBASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 BX510359.4-201ENST00000423750 193 ntBASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 AL049830.1-201ENST00000468034 425 ntBASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 SNORA9.3-201ENST00000516383 129 ntBASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 RNA5SP137-201ENST00000516833 135 ntBASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 Y_RNA.714-201ENST00000517065 90 ntBASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 MIR548AI-201ENST00000579940 88 ntBASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 AC120024.3-201ENST00000603167 156 ntBASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.64□□□□□ -1.99
NKX2-4Q9H2Z4 MIR6873-201ENST00000622788 63 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 226.4 ms