Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.23□□□□□ -2.05
CHMP4CQ96CF2 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
CHMP4CQ96CF2 SNORA1B-201ENST00000362535 133 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 RNU6-1272P-201ENST00000362776 107 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 RNU6-1048P-201ENST00000364054 107 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 RNU6-574P-201ENST00000384265 107 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 MTCO2P33-201ENST00000402100 465 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 AL034345.1-201ENST00000407768 123 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 MIR548H3-201ENST00000408771 118 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 BTF3P11-201ENST00000426582 477 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 STAG3L5P-204ENST00000443759 179 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 HMGN2P23-201ENST00000456759 269 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 RNU6-1132P-201ENST00000459214 107 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 RNU7-141P-201ENST00000459304 62 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 RPL23AP54-201ENST00000495129 419 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 RPS29P11-201ENST00000496507 171 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 Y_RNA.668-201ENST00000516233 93 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 RNU7-115P-201ENST00000516433 55 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 AP003357.1-201ENST00000604497 148 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 AL078604.3-201ENST00000615580 211 ntBASIC2.22□□□□□ -2.05
CHMP4CQ96CF2 UBE2WP1-201ENST00000362030 340 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 RNU6-661P-201ENST00000362409 107 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 RNU6-899P-201ENST00000363947 107 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 Y_RNA.193-201ENST00000363979 102 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 Y_RNA.275-201ENST00000364726 110 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 RNU6-763P-201ENST00000390865 106 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 SNORA26.5-201ENST00000391215 123 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 RNU2-40P-201ENST00000410833 196 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 U8.19-201ENST00000459095 133 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 RPL39P38-201ENST00000467018 153 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 AL049830.1-201ENST00000468034 425 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 RPL23AP42-201ENST00000471152 471 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 SNORA31.10-201ENST00000516482 106 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 RNU7-28P-201ENST00000516759 62 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 RNU6-548P-201ENST00000517083 115 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 AC012433.1-201ENST00000588916 398 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 AC062037.2-201ENST00000610137 73 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
CHMP4CQ96CF2 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.2□□□□□ -2.06
CHMP4CQ96CF2 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.2□□□□□ -2.06
CHMP4CQ96CF2 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.2□□□□□ -2.06
CHMP4CQ96CF2 AC134026.1-201ENST00000623249 2239 ntBASIC2.2□□□□□ -2.06
CHMP4CQ96CF2 Y_RNA.14-201ENST00000362415 103 ntBASIC2.2□□□□□ -2.06
CHMP4CQ96CF2 Y_RNA.54-201ENST00000362766 105 ntBASIC2.2□□□□□ -2.06
CHMP4CQ96CF2 U8.7-201ENST00000364940 136 ntBASIC2.2□□□□□ -2.06
CHMP4CQ96CF2 Y_RNA.352-201ENST00000365439 102 ntBASIC2.2□□□□□ -2.06
CHMP4CQ96CF2 RNU6-1080P-201ENST00000383982 107 ntBASIC2.2□□□□□ -2.06
CHMP4CQ96CF2 RNU2-14P-201ENST00000411053 191 ntBASIC2.2□□□□□ -2.06
CHMP4CQ96CF2 snoU13.23-201ENST00000458863 104 ntBASIC2.2□□□□□ -2.06
CHMP4CQ96CF2 AC004817.2-201ENST00000561794 651 ntBASIC2.2□□□□□ -2.06
CHMP4CQ96CF2 AC127455.1-201ENST00000565496 145 ntBASIC2.2□□□□□ -2.06
CHMP4CQ96CF2 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
CHMP4CQ96CF2 Y_RNA.217-201ENST00000364214 105 ntBASIC2.19□□□□□ -2.06
CHMP4CQ96CF2 SNORA16.1-201ENST00000364597 132 ntBASIC2.19□□□□□ -2.06
CHMP4CQ96CF2 RNU6-439P-201ENST00000384188 106 ntBASIC2.19□□□□□ -2.06
CHMP4CQ96CF2 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.19□□□□□ -2.06
CHMP4CQ96CF2 Y_RNA.638-201ENST00000459374 113 ntBASIC2.19□□□□□ -2.06
CHMP4CQ96CF2 Y_RNA.641-201ENST00000459414 105 ntBASIC2.19□□□□□ -2.06
CHMP4CQ96CF2 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CHMP4CQ96CF2 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
CHMP4CQ96CF2 RNU1-17P-201ENST00000363022 152 ntBASIC2.18□□□□□ -2.06
CHMP4CQ96CF2 Y_RNA.140-201ENST00000363474 103 ntBASIC2.18□□□□□ -2.06
CHMP4CQ96CF2 RNU6-1205P-201ENST00000363625 106 ntBASIC2.18□□□□□ -2.06
CHMP4CQ96CF2 RNU6-1289P-201ENST00000384431 106 ntBASIC2.18□□□□□ -2.06
CHMP4CQ96CF2 RNU6-1031P-201ENST00000384773 107 ntBASIC2.18□□□□□ -2.06
CHMP4CQ96CF2 MIR9-3-201ENST00000385084 90 ntBASIC2.18□□□□□ -2.06
CHMP4CQ96CF2 RNA5SP482-201ENST00000391269 118 ntBASIC2.18□□□□□ -2.06
CHMP4CQ96CF2 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.18□□□□□ -2.06
CHMP4CQ96CF2 SNORA44.1-201ENST00000517031 108 ntBASIC2.18□□□□□ -2.06
CHMP4CQ96CF2 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.18□□□□□ -2.06
CHMP4CQ96CF2 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CHMP4CQ96CF2 RNU6-740P-201ENST00000364734 105 ntBASIC2.17□□□□□ -2.06
CHMP4CQ96CF2 Y_RNA.350-201ENST00000365409 98 ntBASIC2.17□□□□□ -2.06
CHMP4CQ96CF2 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
CHMP4CQ96CF2 AL603910.2-201ENST00000407268 136 ntBASIC2.17□□□□□ -2.06
CHMP4CQ96CF2 MIR1267-201ENST00000408723 78 ntBASIC2.17□□□□□ -2.06
CHMP4CQ96CF2 SNORA36B-201ENST00000410438 131 ntBASIC2.17□□□□□ -2.06
CHMP4CQ96CF2 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.17□□□□□ -2.06
CHMP4CQ96CF2 Y_RNA.679-201ENST00000516416 91 ntBASIC2.17□□□□□ -2.06
CHMP4CQ96CF2 DEFB122-202ENST00000569013 197 ntBASIC2.17□□□□□ -2.06
CHMP4CQ96CF2 MIR8074-201ENST00000615081 81 ntBASIC2.17□□□□□ -2.06
CHMP4CQ96CF2 AC013791.1-201ENST00000616619 62 ntBASIC2.17□□□□□ -2.06
CHMP4CQ96CF2 AL353997.5-201ENST00000618886 171 ntBASIC2.17□□□□□ -2.06
CHMP4CQ96CF2 snoU18.1-201ENST00000629629 71 ntBASIC2.17□□□□□ -2.06
CHMP4CQ96CF2 Y_RNA.117-201ENST00000363294 101 ntBASIC2.16□□□□□ -2.06
CHMP4CQ96CF2 Y_RNA.590-201ENST00000410140 107 ntBASIC2.16□□□□□ -2.06
CHMP4CQ96CF2 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.16□□□□□ -2.06
CHMP4CQ96CF2 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.16□□□□□ -2.06
CHMP4CQ96CF2 Y_RNA.637-201ENST00000459424 114 ntBASIC2.16□□□□□ -2.06
CHMP4CQ96CF2 AC024614.2-201ENST00000577584 372 ntBASIC2.16□□□□□ -2.06
CHMP4CQ96CF2 MIR3618-201ENST00000580330 88 ntBASIC2.16□□□□□ -2.06
CHMP4CQ96CF2 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.16□□□□□ -2.06
CHMP4CQ96CF2 AC005357.1-201ENST00000588399 301 ntBASIC2.16□□□□□ -2.06
CHMP4CQ96CF2 AC084768.2-201ENST00000622736 221 ntBASIC2.16□□□□□ -2.06
CHMP4CQ96CF2 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.16□□□□□ -2.06
CHMP4CQ96CF2 Y_RNA.562-201ENST00000384695 113 ntBASIC2.15□□□□□ -2.07
CHMP4CQ96CF2 JTBP1-201ENST00000441314 247 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms