Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 AC007229.1-201ENST00000590455 412 ntBASIC1.88□□□□□ -2.11
PDLIM4P50479 RNU2-4P-201ENST00000606190 192 ntBASIC1.88□□□□□ -2.11
PDLIM4P50479 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.88□□□□□ -2.11
PDLIM4P50479 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.88□□□□□ -2.11
PDLIM4P50479 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
PDLIM4P50479 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.88□□□□□ -2.11
PDLIM4P50479 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.88□□□□□ -2.11
PDLIM4P50479 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
PDLIM4P50479 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.87□□□□□ -2.11
PDLIM4P50479 Y_RNA.24-201ENST00000362508 103 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 RNU4-84P-201ENST00000364200 139 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 RNU6-1164P-201ENST00000364428 107 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 RNU6-969P-201ENST00000383900 105 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 RNU1-148P-201ENST00000384472 162 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 MIR520G-201ENST00000385064 90 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 RNU5E-9P-201ENST00000411164 104 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 AL356379.1-201ENST00000414105 126 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 RNU6-437P-201ENST00000459408 95 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 SCARNA8-201ENST00000515924 131 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 RNU6-237P-201ENST00000515985 71 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 RNU7-121P-201ENST00000516604 62 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 RNU6-63P-201ENST00000516690 95 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 RNA5SP137-201ENST00000516833 135 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 Y_RNA.703-201ENST00000516846 111 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.87□□□□□ -2.11
PDLIM4P50479 AC027419.1-201ENST00000522976 328 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 AC024995.1-201ENST00000523014 93 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 AL358944.1-201ENST00000528537 144 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.87□□□□□ -2.11
PDLIM4P50479 DEFB122-202ENST00000569013 197 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 MIR4448-201ENST00000584360 86 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 AC091178.2-201ENST00000584401 117 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 AL021707.8-201ENST00000609428 183 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 MIR219B-201ENST00000637023 88 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 U6.108-201ENST00000637764 58 ntBASIC1.87□□□□□ -2.11
PDLIM4P50479 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.87□□□□□ -2.11
PDLIM4P50479 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
PDLIM4P50479 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
PDLIM4P50479 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC1.86□□□□□ -2.11
PDLIM4P50479 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
PDLIM4P50479 MIR21-201ENST00000362134 72 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 MIR367-201ENST00000362299 68 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 Y_RNA.170-201ENST00000363746 110 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 Y_RNA.229-201ENST00000364347 113 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 RNU4-10P-201ENST00000364383 140 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.86□□□□□ -2.11
PDLIM4P50479 Y_RNA.506-201ENST00000384494 102 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 RNU4-43P-201ENST00000410628 137 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 RNU2-40P-201ENST00000410833 196 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 CST2P1-201ENST00000425770 87 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 HMGN2P3-201ENST00000433603 273 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 HMGN2P5-201ENST00000436882 273 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 ATP5J2P3-201ENST00000451550 258 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.86□□□□□ -2.11
PDLIM4P50479 RNA5SP233-201ENST00000459153 113 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 AC091021.1-201ENST00000468051 388 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 RPS26P45-201ENST00000471748 340 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 AC010409.1-201ENST00000487382 476 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 RNA5SP200-201ENST00000516360 103 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 MIR3169-201ENST00000578032 83 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 MIR4431-201ENST00000579990 94 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 AL359075.3-201ENST00000613288 217 ntBASIC1.86□□□□□ -2.11
PDLIM4P50479 AC100821.1-201ENST00000523153 2479 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 Y_RNA.182-201ENST00000363880 111 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 RNU4-13P-201ENST00000364019 141 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 RNA5SP493-201ENST00000364115 91 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 Y_RNA.272-201ENST00000364696 102 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 SNORD50.2-201ENST00000365465 70 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 RNU6-125P-201ENST00000384505 107 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 Y_RNA.572-201ENST00000384757 98 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 MIR562-201ENST00000384894 95 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 RNU2-55P-201ENST00000411146 174 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 RPS4XP11-201ENST00000446897 772 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 snoU13.23-201ENST00000458863 104 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 Y_RNA.797-201ENST00000515977 94 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 RNU7-200P-201ENST00000516105 62 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 RNU6-406P-201ENST00000516470 107 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 MIR2681-201ENST00000581814 105 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 AC021753.1-201ENST00000635724 168 ntBASIC1.85□□□□□ -2.11
PDLIM4P50479 AC018630.2-201ENST00000534866 2403 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
PDLIM4P50479 RNU1-51P-201ENST00000365345 176 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 SNORA64-201ENST00000384674 134 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 RNU6-417P-201ENST00000384712 107 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 RNU6-376P-201ENST00000384731 106 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 RNU6-239P-201ENST00000390990 99 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 AL512604.1-201ENST00000404812 257 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 RNU4-61P-201ENST00000411243 107 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 RPL23AP42-201ENST00000471152 471 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 RPL23AP54-201ENST00000495129 419 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 AC108210.2-201ENST00000503681 201 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 SCARNA16.3-201ENST00000516595 184 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 AC109810.1-201ENST00000534066 224 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 AL160236.1-201ENST00000556317 195 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 MIR4769-201ENST00000584126 77 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 AC009831.4-201ENST00000620744 325 ntBASIC1.84□□□□□ -2.11
PDLIM4P50479 SNORD115-3-201ENST00000363100 82 ntBASIC1.83□□□□□ -2.12
PDLIM4P50479 Y_RNA.203-201ENST00000364106 102 ntBASIC1.83□□□□□ -2.12
PDLIM4P50479 SNORA48.3-201ENST00000391081 134 ntBASIC1.83□□□□□ -2.12
PDLIM4P50479 MIR1289-2-201ENST00000408360 111 ntBASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms