Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AL359851.1-201ENST00000569460 4997 ntBASIC1.92□□□□□ -2.1
SOX2P48431 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.91□□□□□ -2.1
SOX2P48431 SNORA1B-201ENST00000362535 133 ntBASIC1.91□□□□□ -2.1
SOX2P48431 RNU6-209P-201ENST00000384118 107 ntBASIC1.91□□□□□ -2.1
SOX2P48431 Y_RNA.555-201ENST00000384673 110 ntBASIC1.91□□□□□ -2.1
SOX2P48431 MIR520A-201ENST00000384862 85 ntBASIC1.91□□□□□ -2.1
SOX2P48431 RNA5SP109-201ENST00000391010 116 ntBASIC1.91□□□□□ -2.1
SOX2P48431 AL606517.2-201ENST00000442855 241 ntBASIC1.91□□□□□ -2.1
SOX2P48431 AC245047.8-201ENST00000456455 284 ntBASIC1.91□□□□□ -2.1
SOX2P48431 RNU6-717P-201ENST00000459076 104 ntBASIC1.91□□□□□ -2.1
SOX2P48431 AL049830.1-201ENST00000468034 425 ntBASIC1.91□□□□□ -2.1
SOX2P48431 AC090255.1-201ENST00000495779 349 ntBASIC1.91□□□□□ -2.1
SOX2P48431 Y_RNA.797-201ENST00000515977 94 ntBASIC1.91□□□□□ -2.1
SOX2P48431 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.91□□□□□ -2.1
SOX2P48431 SUB1P4-201ENST00000566062 339 ntBASIC1.91□□□□□ -2.1
SOX2P48431 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.91□□□□□ -2.1
SOX2P48431 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.91□□□□□ -2.1
SOX2P48431 JPX_2.1-201ENST00000614161 69 ntBASIC1.91□□□□□ -2.1
SOX2P48431 AC009831.4-201ENST00000620744 325 ntBASIC1.91□□□□□ -2.1
SOX2P48431 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC1.91□□□□□ -2.1
SOX2P48431 CTSLP2-204ENST00000629029 392 ntBASIC1.91□□□□□ -2.1
SOX2P48431 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC1.91□□□□□ -2.1
SOX2P48431 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
SOX2P48431 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SOX2P48431 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.91□□□□□ -2.1
SOX2P48431 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.9□□□□□ -2.11
SOX2P48431 Y_RNA.150-201ENST00000363562 102 ntBASIC1.9□□□□□ -2.11
SOX2P48431 RNU6-682P-201ENST00000363843 106 ntBASIC1.9□□□□□ -2.11
SOX2P48431 Y_RNA.182-201ENST00000363880 111 ntBASIC1.9□□□□□ -2.11
SOX2P48431 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
SOX2P48431 MIR1278-201ENST00000408753 81 ntBASIC1.9□□□□□ -2.11
SOX2P48431 RPS27P1-201ENST00000450552 247 ntBASIC1.9□□□□□ -2.11
SOX2P48431 AC023449.1-201ENST00000454464 154 ntBASIC1.9□□□□□ -2.11
SOX2P48431 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.9□□□□□ -2.11
SOX2P48431 HMGN1P7-201ENST00000491722 313 ntBASIC1.9□□□□□ -2.11
SOX2P48431 Y_RNA.662-201ENST00000516028 97 ntBASIC1.9□□□□□ -2.11
SOX2P48431 RNU6-1007P-201ENST00000516586 107 ntBASIC1.9□□□□□ -2.11
SOX2P48431 RPL23AP91-201ENST00000569211 455 ntBASIC1.9□□□□□ -2.11
SOX2P48431 MIR4744-201ENST00000581563 82 ntBASIC1.9□□□□□ -2.11
SOX2P48431 RNU6-1209P-201ENST00000363655 107 ntBASIC1.89□□□□□ -2.11
SOX2P48431 Y_RNA.796-201ENST00000364268 102 ntBASIC1.89□□□□□ -2.11
SOX2P48431 SNORA63D-201ENST00000364359 132 ntBASIC1.89□□□□□ -2.11
SOX2P48431 Y_RNA.253-201ENST00000364562 112 ntBASIC1.89□□□□□ -2.11
SOX2P48431 RNA5SP160-201ENST00000364866 120 ntBASIC1.89□□□□□ -2.11
SOX2P48431 Y_RNA.799-201ENST00000364992 102 ntBASIC1.89□□□□□ -2.11
SOX2P48431 Y_RNA.510-201ENST00000384511 114 ntBASIC1.89□□□□□ -2.11
SOX2P48431 RNU6-950P-201ENST00000384651 107 ntBASIC1.89□□□□□ -2.11
SOX2P48431 RNU6-1228P-201ENST00000391014 107 ntBASIC1.89□□□□□ -2.11
SOX2P48431 MIR548I3-201ENST00000408378 149 ntBASIC1.89□□□□□ -2.11
SOX2P48431 MIR548I1-201ENST00000408810 149 ntBASIC1.89□□□□□ -2.11
SOX2P48431 RNU2-7P-201ENST00000410794 178 ntBASIC1.89□□□□□ -2.11
SOX2P48431 RN7SKP101-201ENST00000411376 320 ntBASIC1.89□□□□□ -2.11
SOX2P48431 AL021397.1-201ENST00000451806 248 ntBASIC1.89□□□□□ -2.11
SOX2P48431 AC055731.1-201ENST00000474387 401 ntBASIC1.89□□□□□ -2.11
SOX2P48431 SCARNA8-201ENST00000515924 131 ntBASIC1.89□□□□□ -2.11
SOX2P48431 RNA5SP281-201ENST00000516504 135 ntBASIC1.89□□□□□ -2.11
SOX2P48431 RNU6-453P-201ENST00000516819 85 ntBASIC1.89□□□□□ -2.11
SOX2P48431 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.89□□□□□ -2.11
SOX2P48431 U6.106-201ENST00000636360 105 ntBASIC1.89□□□□□ -2.11
SOX2P48431 AP000553.5-201ENST00000641933 54 ntBASIC1.89□□□□□ -2.11
SOX2P48431 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
SOX2P48431 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
SOX2P48431 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
SOX2P48431 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC1.88□□□□□ -2.11
SOX2P48431 RNU6-112P-201ENST00000363599 104 ntBASIC1.88□□□□□ -2.11
SOX2P48431 Y_RNA.240-201ENST00000364469 95 ntBASIC1.88□□□□□ -2.11
SOX2P48431 Y_RNA.265-201ENST00000364677 108 ntBASIC1.88□□□□□ -2.11
SOX2P48431 RNA5SP37-201ENST00000365420 130 ntBASIC1.88□□□□□ -2.11
SOX2P48431 RNY3P5-201ENST00000384127 102 ntBASIC1.88□□□□□ -2.11
SOX2P48431 RNU6-886P-201ENST00000384319 105 ntBASIC1.88□□□□□ -2.11
SOX2P48431 MT-TT-201ENST00000387460 66 ntBASIC1.88□□□□□ -2.11
SOX2P48431 RNU6-440P-201ENST00000390882 105 ntBASIC1.88□□□□□ -2.11
SOX2P48431 AL606845.1-201ENST00000404881 255 ntBASIC1.88□□□□□ -2.11
SOX2P48431 RNU6-1219P-201ENST00000516143 112 ntBASIC1.88□□□□□ -2.11
SOX2P48431 RNU7-28P-201ENST00000516759 62 ntBASIC1.88□□□□□ -2.11
SOX2P48431 MIR514B-201ENST00000516774 80 ntBASIC1.88□□□□□ -2.11
SOX2P48431 RNU1-40P-201ENST00000516816 164 ntBASIC1.88□□□□□ -2.11
SOX2P48431 RNU1-97P-201ENST00000516872 164 ntBASIC1.88□□□□□ -2.11
SOX2P48431 Y_RNA.714-201ENST00000517065 90 ntBASIC1.88□□□□□ -2.11
SOX2P48431 MIR5002-201ENST00000584713 97 ntBASIC1.88□□□□□ -2.11
SOX2P48431 AL021707.8-201ENST00000609428 183 ntBASIC1.88□□□□□ -2.11
SOX2P48431 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.88□□□□□ -2.11
SOX2P48431 MIR8054-201ENST00000620877 86 ntBASIC1.88□□□□□ -2.11
SOX2P48431 MIR6132-201ENST00000622083 109 ntBASIC1.88□□□□□ -2.11
SOX2P48431 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.88□□□□□ -2.11
SOX2P48431 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
SOX2P48431 Y_RNA.75-201ENST00000362927 97 ntBASIC1.87□□□□□ -2.11
SOX2P48431 Y_RNA.412-201ENST00000384001 104 ntBASIC1.87□□□□□ -2.11
SOX2P48431 RNU6-578P-201ENST00000390980 103 ntBASIC1.87□□□□□ -2.11
SOX2P48431 RNA5SP482-201ENST00000391269 118 ntBASIC1.87□□□□□ -2.11
SOX2P48431 RNA5SP338-201ENST00000410495 85 ntBASIC1.87□□□□□ -2.11
SOX2P48431 SNRPGP10-201ENST00000432323 225 ntBASIC1.87□□□□□ -2.11
SOX2P48431 AC025033.1-201ENST00000463883 194 ntBASIC1.87□□□□□ -2.11
SOX2P48431 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.87□□□□□ -2.11
SOX2P48431 RPL23AP94-201ENST00000512518 302 ntBASIC1.87□□□□□ -2.11
SOX2P48431 MRPS18CP4-201ENST00000535821 231 ntBASIC1.87□□□□□ -2.11
SOX2P48431 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC1.87□□□□□ -2.11
SOX2P48431 AC002984.1-201ENST00000591692 448 ntBASIC1.87□□□□□ -2.11
SOX2P48431 AL049861.1-201ENST00000603130 150 ntBASIC1.87□□□□□ -2.11
SOX2P48431 AC108706.1-201ENST00000611053 297 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 164.1 ms