Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
MSH2P43246 SNORA63C-201ENST00000364578 129 ntBASIC1.54□□□□□ -2.16
MSH2P43246 RNU6-290P-201ENST00000365212 101 ntBASIC1.54□□□□□ -2.16
MSH2P43246 RNU6-1080P-201ENST00000383982 107 ntBASIC1.54□□□□□ -2.16
MSH2P43246 RNU6-1323P-201ENST00000384025 107 ntBASIC1.54□□□□□ -2.16
MSH2P43246 MIR606-201ENST00000384851 96 ntBASIC1.54□□□□□ -2.16
MSH2P43246 MIR215-201ENST00000384858 110 ntBASIC1.54□□□□□ -2.16
MSH2P43246 RNU6-1248P-201ENST00000391096 64 ntBASIC1.54□□□□□ -2.16
MSH2P43246 PGBD4P5-201ENST00000445958 426 ntBASIC1.54□□□□□ -2.16
MSH2P43246 Y_RNA.720-201ENST00000517166 92 ntBASIC1.54□□□□□ -2.16
MSH2P43246 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.54□□□□□ -2.16
MSH2P43246 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.54□□□□□ -2.16
MSH2P43246 BX248123.2-201ENST00000606318 124 ntBASIC1.54□□□□□ -2.16
MSH2P43246 MIR7974-201ENST00000615835 79 ntBASIC1.54□□□□□ -2.16
MSH2P43246 AL353997.5-201ENST00000618886 171 ntBASIC1.54□□□□□ -2.16
MSH2P43246 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.54□□□□□ -2.16
MSH2P43246 AC068647.2-201ENST00000637380 353 ntBASIC1.54□□□□□ -2.16
MSH2P43246 AL161722.3-201ENST00000605789 2983 ntBASIC1.54□□□□□ -2.16
MSH2P43246 RNU1-42P-201ENST00000364033 160 ntBASIC1.53□□□□□ -2.16
MSH2P43246 RNU4-41P-201ENST00000364426 143 ntBASIC1.53□□□□□ -2.16
MSH2P43246 RNU6-1065P-201ENST00000384513 106 ntBASIC1.53□□□□□ -2.16
MSH2P43246 Y_RNA.541-201ENST00000384640 113 ntBASIC1.53□□□□□ -2.16
MSH2P43246 MIR513A1-201ENST00000385138 129 ntBASIC1.53□□□□□ -2.16
MSH2P43246 AL078595.1-201ENST00000404458 226 ntBASIC1.53□□□□□ -2.16
MSH2P43246 RN7SKP51-201ENST00000410781 304 ntBASIC1.53□□□□□ -2.16
MSH2P43246 Y_RNA.621-201ENST00000411065 96 ntBASIC1.53□□□□□ -2.16
MSH2P43246 RNU6-191P-201ENST00000516295 94 ntBASIC1.53□□□□□ -2.16
MSH2P43246 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.53□□□□□ -2.16
MSH2P43246 MIR4719-201ENST00000585233 84 ntBASIC1.53□□□□□ -2.16
MSH2P43246 AL078604.3-201ENST00000615580 211 ntBASIC1.53□□□□□ -2.16
MSH2P43246 RNA5SP259-201ENST00000365541 109 ntBASIC1.52□□□□□ -2.17
MSH2P43246 SNORA72-201ENST00000384339 132 ntBASIC1.52□□□□□ -2.17
MSH2P43246 RNU6-424P-201ENST00000384367 105 ntBASIC1.52□□□□□ -2.17
MSH2P43246 RNU6-1109P-201ENST00000391187 107 ntBASIC1.52□□□□□ -2.17
MSH2P43246 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.52□□□□□ -2.17
MSH2P43246 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.52□□□□□ -2.17
MSH2P43246 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.52□□□□□ -2.17
MSH2P43246 CALM2P4-201ENST00000430810 426 ntBASIC1.52□□□□□ -2.17
MSH2P43246 Z98949.2-201ENST00000440996 144 ntBASIC1.52□□□□□ -2.17
MSH2P43246 DYNLT3P2-201ENST00000442517 295 ntBASIC1.52□□□□□ -2.17
MSH2P43246 RNA5SP168-201ENST00000516642 112 ntBASIC1.52□□□□□ -2.17
MSH2P43246 RNU7-116P-201ENST00000516940 62 ntBASIC1.52□□□□□ -2.17
MSH2P43246 AC136628.3-201ENST00000521868 290 ntBASIC1.52□□□□□ -2.17
MSH2P43246 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.52□□□□□ -2.17
MSH2P43246 PRR13P7-201ENST00000605538 430 ntBASIC1.52□□□□□ -2.17
MSH2P43246 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.51□□□□□ -2.17
MSH2P43246 RNU1-17P-201ENST00000363022 152 ntBASIC1.51□□□□□ -2.17
MSH2P43246 Y_RNA.145-201ENST00000363527 102 ntBASIC1.51□□□□□ -2.17
MSH2P43246 MIR660-201ENST00000385235 97 ntBASIC1.51□□□□□ -2.17
MSH2P43246 U8.16-201ENST00000391279 133 ntBASIC1.51□□□□□ -2.17
MSH2P43246 RNU6-955P-201ENST00000410497 104 ntBASIC1.51□□□□□ -2.17
MSH2P43246 RPL30P13-201ENST00000418873 348 ntBASIC1.51□□□□□ -2.17
MSH2P43246 MTCO1P5-201ENST00000433573 344 ntBASIC1.51□□□□□ -2.17
MSH2P43246 RPS29P23-201ENST00000458635 123 ntBASIC1.51□□□□□ -2.17
MSH2P43246 SNORD13-201ENST00000459299 104 ntBASIC1.51□□□□□ -2.17
MSH2P43246 MTATP8P1-201ENST00000467115 207 ntBASIC1.51□□□□□ -2.17
MSH2P43246 SUMO2P16-201ENST00000519475 264 ntBASIC1.51□□□□□ -2.17
MSH2P43246 POLR3GP1-201ENST00000594073 261 ntBASIC1.51□□□□□ -2.17
MSH2P43246 AP003357.1-201ENST00000604497 148 ntBASIC1.51□□□□□ -2.17
MSH2P43246 AL365434.2-201ENST00000607979 234 ntBASIC1.51□□□□□ -2.17
MSH2P43246 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.51□□□□□ -2.17
MSH2P43246 SNORD3E-202ENST00000627253 216 ntBASIC1.51□□□□□ -2.17
MSH2P43246 MIRLET7C-201ENST00000362160 84 ntBASIC1.5□□□□□ -2.17
MSH2P43246 Y_RNA.84-201ENST00000363011 104 ntBASIC1.5□□□□□ -2.17
MSH2P43246 RNA5SP99-201ENST00000364020 114 ntBASIC1.5□□□□□ -2.17
MSH2P43246 RNU6-801P-201ENST00000364087 105 ntBASIC1.5□□□□□ -2.17
MSH2P43246 U8.7-201ENST00000364940 136 ntBASIC1.5□□□□□ -2.17
MSH2P43246 RNU6-326P-201ENST00000365480 107 ntBASIC1.5□□□□□ -2.17
MSH2P43246 RNU6-738P-201ENST00000384531 106 ntBASIC1.5□□□□□ -2.17
MSH2P43246 SNORA67.5-201ENST00000391036 107 ntBASIC1.5□□□□□ -2.17
MSH2P43246 RNU6-482P-201ENST00000391068 107 ntBASIC1.5□□□□□ -2.17
MSH2P43246 SNX2P2-201ENST00000424553 323 ntBASIC1.5□□□□□ -2.17
MSH2P43246 AC104332.1-201ENST00000440471 797 ntBASIC1.5□□□□□ -2.17
MSH2P43246 AC117454.1-201ENST00000491120 168 ntBASIC1.5□□□□□ -2.17
MSH2P43246 RNU7-115P-201ENST00000516433 55 ntBASIC1.5□□□□□ -2.17
MSH2P43246 RNU2-31P-201ENST00000516954 155 ntBASIC1.5□□□□□ -2.17
MSH2P43246 AC024405.2-202ENST00000532731 184 ntBASIC1.5□□□□□ -2.17
MSH2P43246 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.5□□□□□ -2.17
MSH2P43246 AL591926.4-201ENST00000616895 298 ntBASIC1.5□□□□□ -2.17
MSH2P43246 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.5□□□□□ -2.17
MSH2P43246 MIR26B-201ENST00000362251 77 ntBASIC1.49□□□□□ -2.17
MSH2P43246 SNORA72.4-201ENST00000384174 132 ntBASIC1.49□□□□□ -2.17
MSH2P43246 RNU6-1105P-201ENST00000384774 107 ntBASIC1.49□□□□□ -2.17
MSH2P43246 MIR517C-201ENST00000385103 95 ntBASIC1.49□□□□□ -2.17
MSH2P43246 SNORA53-201ENST00000391141 249 ntBASIC1.49□□□□□ -2.17
MSH2P43246 MTND4LP30-201ENST00000454092 297 ntBASIC1.49□□□□□ -2.17
MSH2P43246 MTND5P22-201ENST00000458380 195 ntBASIC1.49□□□□□ -2.17
MSH2P43246 U8.19-201ENST00000459095 133 ntBASIC1.49□□□□□ -2.17
MSH2P43246 RNA5SP61-201ENST00000516453 100 ntBASIC1.49□□□□□ -2.17
MSH2P43246 RNU6-635P-201ENST00000516651 102 ntBASIC1.49□□□□□ -2.17
MSH2P43246 SNORD53B-201ENST00000577887 78 ntBASIC1.49□□□□□ -2.17
MSH2P43246 AC008737.2-201ENST00000599446 118 ntBASIC1.49□□□□□ -2.17
MSH2P43246 MIR548AY-201ENST00000617669 107 ntBASIC1.49□□□□□ -2.17
MSH2P43246 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
MSH2P43246 Y_RNA.16-201ENST00000362421 102 ntBASIC1.48□□□□□ -2.17
MSH2P43246 RNU6-1048P-201ENST00000364054 107 ntBASIC1.48□□□□□ -2.17
MSH2P43246 Y_RNA.253-201ENST00000364562 112 ntBASIC1.48□□□□□ -2.17
MSH2P43246 SNORD26-201ENST00000384147 75 ntBASIC1.48□□□□□ -2.17
MSH2P43246 MIR548F4-201ENST00000408515 105 ntBASIC1.48□□□□□ -2.17
MSH2P43246 RNU6-1203P-201ENST00000410703 110 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 145.9 ms