Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.34□□□□□ -1.87
USP3Q9Y6I4 AC003685.2-201ENST00000422795 395 ntBASIC3.34□□□□□ -1.87
USP3Q9Y6I4 AC115115.1-201ENST00000449927 248 ntBASIC3.34□□□□□ -1.87
USP3Q9Y6I4 RN7SL863P-201ENST00000462370 296 ntBASIC3.34□□□□□ -1.87
USP3Q9Y6I4 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC3.34□□□□□ -1.87
USP3Q9Y6I4 SNORA70.24-201ENST00000517233 118 ntBASIC3.34□□□□□ -1.87
USP3Q9Y6I4 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.34□□□□□ -1.87
USP3Q9Y6I4 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.88
USP3Q9Y6I4 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.88
USP3Q9Y6I4 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
USP3Q9Y6I4 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
USP3Q9Y6I4 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
USP3Q9Y6I4 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
USP3Q9Y6I4 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.33□□□□□ -1.88
USP3Q9Y6I4 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
USP3Q9Y6I4 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
USP3Q9Y6I4 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.33□□□□□ -1.88
USP3Q9Y6I4 RNA5SP374-201ENST00000362939 125 ntBASIC3.33□□□□□ -1.88
USP3Q9Y6I4 MIR491-201ENST00000384877 84 ntBASIC3.33□□□□□ -1.88
USP3Q9Y6I4 HMGN2P32-201ENST00000444648 269 ntBASIC3.33□□□□□ -1.88
USP3Q9Y6I4 RPS29P12-201ENST00000460178 152 ntBASIC3.33□□□□□ -1.88
USP3Q9Y6I4 RNU6-970P-201ENST00000516312 107 ntBASIC3.33□□□□□ -1.88
USP3Q9Y6I4 RNY4P20-201ENST00000516678 93 ntBASIC3.33□□□□□ -1.88
USP3Q9Y6I4 RNU7-28P-201ENST00000516759 62 ntBASIC3.33□□□□□ -1.88
USP3Q9Y6I4 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.33□□□□□ -1.88
USP3Q9Y6I4 MIR4778-201ENST00000577635 80 ntBASIC3.33□□□□□ -1.88
USP3Q9Y6I4 MIR3200-201ENST00000580767 85 ntBASIC3.33□□□□□ -1.88
USP3Q9Y6I4 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.33□□□□□ -1.88
USP3Q9Y6I4 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.33□□□□□ -1.88
USP3Q9Y6I4 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
USP3Q9Y6I4 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
USP3Q9Y6I4 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
USP3Q9Y6I4 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
USP3Q9Y6I4 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
USP3Q9Y6I4 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
USP3Q9Y6I4 SNORD56.3-201ENST00000363507 71 ntBASIC3.32□□□□□ -1.88
USP3Q9Y6I4 SNORA63.5-201ENST00000363548 123 ntBASIC3.32□□□□□ -1.88
USP3Q9Y6I4 Y_RNA.558-201ENST00000384685 113 ntBASIC3.32□□□□□ -1.88
USP3Q9Y6I4 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.32□□□□□ -1.88
USP3Q9Y6I4 AC087499.4-201ENST00000448505 178 ntBASIC3.32□□□□□ -1.88
USP3Q9Y6I4 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.32□□□□□ -1.88
USP3Q9Y6I4 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.32□□□□□ -1.88
USP3Q9Y6I4 AL449363.1-201ENST00000617815 186 ntBASIC3.32□□□□□ -1.88
USP3Q9Y6I4 AL035470.1-201ENST00000622571 220 ntBASIC3.32□□□□□ -1.88
USP3Q9Y6I4 CTSLP2-204ENST00000629029 392 ntBASIC3.32□□□□□ -1.88
USP3Q9Y6I4 MIR622-201ENST00000638396 96 ntBASIC3.32□□□□□ -1.88
USP3Q9Y6I4 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
USP3Q9Y6I4 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
USP3Q9Y6I4 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
USP3Q9Y6I4 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP3Q9Y6I4 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
USP3Q9Y6I4 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP3Q9Y6I4 RNU6-349P-201ENST00000362402 107 ntBASIC3.31□□□□□ -1.88
USP3Q9Y6I4 Y_RNA.78-201ENST00000362970 110 ntBASIC3.31□□□□□ -1.88
USP3Q9Y6I4 Y_RNA.362-201ENST00000365518 110 ntBASIC3.31□□□□□ -1.88
USP3Q9Y6I4 RNY1P6-201ENST00000384193 109 ntBASIC3.31□□□□□ -1.88
USP3Q9Y6I4 Y_RNA.454-201ENST00000384224 113 ntBASIC3.31□□□□□ -1.88
USP3Q9Y6I4 MIR181B1-201ENST00000385240 110 ntBASIC3.31□□□□□ -1.88
USP3Q9Y6I4 RNA5SP482-201ENST00000391269 118 ntBASIC3.31□□□□□ -1.88
USP3Q9Y6I4 RPL23AP83-201ENST00000434984 473 ntBASIC3.31□□□□□ -1.88
USP3Q9Y6I4 AC107083.1-201ENST00000439643 279 ntBASIC3.31□□□□□ -1.88
USP3Q9Y6I4 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.31□□□□□ -1.88
USP3Q9Y6I4 RNU6-158P-201ENST00000517104 100 ntBASIC3.31□□□□□ -1.88
USP3Q9Y6I4 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.31□□□□□ -1.88
USP3Q9Y6I4 UBL5P2-201ENST00000583788 219 ntBASIC3.31□□□□□ -1.88
USP3Q9Y6I4 Y_RNA.818-201ENST00000618813 71 ntBASIC3.31□□□□□ -1.88
USP3Q9Y6I4 MIR2052-201ENST00000636055 55 ntBASIC3.31□□□□□ -1.88
USP3Q9Y6I4 MIR376A2-201ENST00000636782 80 ntBASIC3.31□□□□□ -1.88
USP3Q9Y6I4 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.31□□□□□ -1.88
USP3Q9Y6I4 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.31□□□□□ -1.88
USP3Q9Y6I4 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
USP3Q9Y6I4 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP3Q9Y6I4 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
USP3Q9Y6I4 RNU6-1084P-201ENST00000362498 107 ntBASIC3.3□□□□□ -1.88
USP3Q9Y6I4 Y_RNA.37-201ENST00000362606 108 ntBASIC3.3□□□□□ -1.88
USP3Q9Y6I4 U8.6-201ENST00000364939 135 ntBASIC3.3□□□□□ -1.88
USP3Q9Y6I4 RNU6-294P-201ENST00000364999 102 ntBASIC3.3□□□□□ -1.88
USP3Q9Y6I4 AL590004.2-201ENST00000404787 371 ntBASIC3.3□□□□□ -1.88
USP3Q9Y6I4 RNA5SP293-201ENST00000410527 113 ntBASIC3.3□□□□□ -1.88
USP3Q9Y6I4 RNU7-80P-201ENST00000459562 61 ntBASIC3.3□□□□□ -1.88
USP3Q9Y6I4 AC018868.1-201ENST00000491307 315 ntBASIC3.3□□□□□ -1.88
USP3Q9Y6I4 SNORA64.4-201ENST00000516632 81 ntBASIC3.3□□□□□ -1.88
USP3Q9Y6I4 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC3.3□□□□□ -1.88
USP3Q9Y6I4 AC021443.1-201ENST00000604478 211 ntBASIC3.3□□□□□ -1.88
USP3Q9Y6I4 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
USP3Q9Y6I4 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP3Q9Y6I4 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
USP3Q9Y6I4 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP3Q9Y6I4 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC3.29□□□□□ -1.88
USP3Q9Y6I4 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP3Q9Y6I4 SNORD68-201ENST00000363214 84 ntBASIC3.29□□□□□ -1.88
USP3Q9Y6I4 RNU6-414P-201ENST00000363705 104 ntBASIC3.29□□□□□ -1.88
USP3Q9Y6I4 RNU1-133P-201ENST00000364867 167 ntBASIC3.29□□□□□ -1.88
USP3Q9Y6I4 SNORA25B-201ENST00000365507 128 ntBASIC3.29□□□□□ -1.88
USP3Q9Y6I4 AL445646.1-201ENST00000431784 216 ntBASIC3.29□□□□□ -1.88
USP3Q9Y6I4 RNU7-25P-201ENST00000516544 62 ntBASIC3.29□□□□□ -1.88
USP3Q9Y6I4 MIR5009-201ENST00000578736 100 ntBASIC3.29□□□□□ -1.88
USP3Q9Y6I4 U4atac.1-201ENST00000618345 95 ntBASIC3.29□□□□□ -1.88
USP3Q9Y6I4 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
USP3Q9Y6I4 RNU6-268P-201ENST00000364174 107 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms