Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.54□□□□□ -2
TRIM39Q9HCM9 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.53□□□□□ -2
TRIM39Q9HCM9 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
TRIM39Q9HCM9 Y_RNA.75-201ENST00000362927 97 ntBASIC2.53□□□□□ -2
TRIM39Q9HCM9 RNU1-138P-201ENST00000384093 164 ntBASIC2.53□□□□□ -2
TRIM39Q9HCM9 MIR27B-201ENST00000385129 97 ntBASIC2.53□□□□□ -2
TRIM39Q9HCM9 SNORA48.1-201ENST00000390879 135 ntBASIC2.53□□□□□ -2
TRIM39Q9HCM9 RNU6-1228P-201ENST00000391014 107 ntBASIC2.53□□□□□ -2
TRIM39Q9HCM9 RNA5SP181-201ENST00000410246 98 ntBASIC2.53□□□□□ -2
TRIM39Q9HCM9 AC245047.3-201ENST00000429428 127 ntBASIC2.53□□□□□ -2
TRIM39Q9HCM9 MTND2P29-201ENST00000438595 412 ntBASIC2.53□□□□□ -2
TRIM39Q9HCM9 AC245047.8-201ENST00000456455 284 ntBASIC2.53□□□□□ -2
TRIM39Q9HCM9 snoU2_19.4-201ENST00000364329 80 ntBASIC2.52□□□□□ -2.01
TRIM39Q9HCM9 RNU6-312P-201ENST00000364629 107 ntBASIC2.52□□□□□ -2.01
TRIM39Q9HCM9 DEFA7P-201ENST00000382676 285 ntBASIC2.52□□□□□ -2.01
TRIM39Q9HCM9 Y_RNA.500-201ENST00000384466 111 ntBASIC2.52□□□□□ -2.01
TRIM39Q9HCM9 RNU6-950P-201ENST00000384651 107 ntBASIC2.52□□□□□ -2.01
TRIM39Q9HCM9 RNA5SP210-201ENST00000391034 120 ntBASIC2.52□□□□□ -2.01
TRIM39Q9HCM9 RN7SKP101-201ENST00000411376 320 ntBASIC2.52□□□□□ -2.01
TRIM39Q9HCM9 UBE2DNL-203ENST00000474922 222 ntBASIC2.52□□□□□ -2.01
TRIM39Q9HCM9 RNU6-1219P-201ENST00000516143 112 ntBASIC2.52□□□□□ -2.01
TRIM39Q9HCM9 RNA5SP148-201ENST00000516527 94 ntBASIC2.52□□□□□ -2.01
TRIM39Q9HCM9 MRPS18CP4-201ENST00000535821 231 ntBASIC2.52□□□□□ -2.01
TRIM39Q9HCM9 AC084364.2-201ENST00000546924 395 ntBASIC2.52□□□□□ -2.01
TRIM39Q9HCM9 AC245884.12-201ENST00000615364 59 ntBASIC2.52□□□□□ -2.01
TRIM39Q9HCM9 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 MIR6073-201ENST00000352083 89 ntBASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 Y_RNA.23-201ENST00000362496 106 ntBASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 RNU6-275P-201ENST00000364910 107 ntBASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 RNU6-1080P-201ENST00000383982 107 ntBASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 Y_RNA.572-201ENST00000384757 98 ntBASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 RNU6-578P-201ENST00000390980 103 ntBASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 AL049830.1-201ENST00000468034 425 ntBASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 HMGN1P7-201ENST00000491722 313 ntBASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 RNU7-193P-201ENST00000516723 65 ntBASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 SNORA31.25-201ENST00000517242 134 ntBASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 RPL23AP91-201ENST00000569211 455 ntBASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 MIR5092-201ENST00000583139 88 ntBASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 U4.3-201ENST00000621047 82 ntBASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.51□□□□□ -2.01
TRIM39Q9HCM9 RNU6-728P-201ENST00000365375 104 ntBASIC2.5□□□□□ -2.01
TRIM39Q9HCM9 Y_RNA.357-201ENST00000365487 109 ntBASIC2.5□□□□□ -2.01
TRIM39Q9HCM9 AL606845.1-201ENST00000404881 255 ntBASIC2.5□□□□□ -2.01
TRIM39Q9HCM9 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.5□□□□□ -2.01
TRIM39Q9HCM9 RNU7-28P-201ENST00000516759 62 ntBASIC2.5□□□□□ -2.01
TRIM39Q9HCM9 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.5□□□□□ -2.01
TRIM39Q9HCM9 CTSLP2-204ENST00000629029 392 ntBASIC2.5□□□□□ -2.01
TRIM39Q9HCM9 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.5□□□□□ -2.01
TRIM39Q9HCM9 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
TRIM39Q9HCM9 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 Y_RNA.242-201ENST00000364473 110 ntBASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 Y_RNA.412-201ENST00000384001 104 ntBASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 Y_RNA.464-201ENST00000384282 110 ntBASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 MIR520A-201ENST00000384862 85 ntBASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 RNU2-7P-201ENST00000410794 178 ntBASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 AC005840.1-201ENST00000498412 377 ntBASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 RNA5SP320-201ENST00000516263 124 ntBASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 SNORA28-201ENST00000606769 126 ntBASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 AC108706.1-201ENST00000611053 297 ntBASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
TRIM39Q9HCM9 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 SNORA1B-201ENST00000362535 133 ntBASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 RNU6-1209P-201ENST00000363655 107 ntBASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 Y_RNA.265-201ENST00000364677 108 ntBASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 SNORA67.1-201ENST00000364749 141 ntBASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 RNU6-1062P-201ENST00000383908 107 ntBASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 SNORA79-201ENST00000408376 140 ntBASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 RNA5SP501-201ENST00000410990 112 ntBASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 SNRPGP10-201ENST00000432323 225 ntBASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 AL121914.1-201ENST00000450188 156 ntBASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 RNVU1-2-201ENST00000516326 135 ntBASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 RNU6-126P-201ENST00000516685 103 ntBASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 RNU6-453P-201ENST00000516819 85 ntBASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 AC109810.1-201ENST00000534066 224 ntBASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 AC022217.4-201ENST00000604389 163 ntBASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
TRIM39Q9HCM9 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.47□□□□□ -2.01
TRIM39Q9HCM9 RNA5SP456-201ENST00000364002 114 ntBASIC2.47□□□□□ -2.01
TRIM39Q9HCM9 Y_RNA.796-201ENST00000364268 102 ntBASIC2.47□□□□□ -2.01
TRIM39Q9HCM9 Y_RNA.253-201ENST00000364562 112 ntBASIC2.47□□□□□ -2.01
TRIM39Q9HCM9 Y_RNA.799-201ENST00000364992 102 ntBASIC2.47□□□□□ -2.01
TRIM39Q9HCM9 RNA5SP109-201ENST00000391010 116 ntBASIC2.47□□□□□ -2.01
TRIM39Q9HCM9 Y_RNA.587-201ENST00000391210 103 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms