Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 MIR518F-201ENST00000384973 87 ntBASIC3.6□□□□□ -1.83
TRERF1Q96PN7 SNORA48.8-201ENST00000391324 134 ntBASIC3.6□□□□□ -1.83
TRERF1Q96PN7 Y_RNA.621-201ENST00000411065 96 ntBASIC3.6□□□□□ -1.83
TRERF1Q96PN7 COTL1P1-201ENST00000422309 375 ntBASIC3.6□□□□□ -1.83
TRERF1Q96PN7 AC022523.2-201ENST00000561045 150 ntBASIC3.6□□□□□ -1.83
TRERF1Q96PN7 MIR5197-201ENST00000583721 112 ntBASIC3.6□□□□□ -1.83
TRERF1Q96PN7 MIR4506-201ENST00000584693 77 ntBASIC3.6□□□□□ -1.83
TRERF1Q96PN7 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.6□□□□□ -1.83
TRERF1Q96PN7 MIR622-201ENST00000638396 96 ntBASIC3.6□□□□□ -1.83
TRERF1Q96PN7 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
TRERF1Q96PN7 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.6□□□□□ -1.83
TRERF1Q96PN7 GABRG2-229ENST00000641017 3628 ntBASIC3.6□□□□□ -1.83
TRERF1Q96PN7 FAM35CP-201ENST00000554755 2470 ntBASIC3.6□□□□□ -1.83
TRERF1Q96PN7 AP003122.5-201ENST00000527668 3766 ntBASIC3.59□□□□□ -1.83
TRERF1Q96PN7 RNU6-690P-201ENST00000365242 106 ntBASIC3.59□□□□□ -1.83
TRERF1Q96PN7 RNU6-1235P-201ENST00000384559 107 ntBASIC3.59□□□□□ -1.83
TRERF1Q96PN7 MIR548D2-201ENST00000384955 97 ntBASIC3.59□□□□□ -1.83
TRERF1Q96PN7 RPL21P3-201ENST00000395517 478 ntBASIC3.59□□□□□ -1.83
TRERF1Q96PN7 RNU6-498P-201ENST00000459468 107 ntBASIC3.59□□□□□ -1.83
TRERF1Q96PN7 SUMO2P16-201ENST00000519475 264 ntBASIC3.59□□□□□ -1.83
TRERF1Q96PN7 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.59□□□□□ -1.83
TRERF1Q96PN7 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.59□□□□□ -1.83
TRERF1Q96PN7 AC110079.1-202ENST00000635213 138 ntBASIC3.59□□□□□ -1.83
TRERF1Q96PN7 AC093831.2-201ENST00000624393 3427 ntBASIC3.59□□□□□ -1.83
TRERF1Q96PN7 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.59□□□□□ -1.84
TRERF1Q96PN7 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.58□□□□□ -1.84
TRERF1Q96PN7 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.58□□□□□ -1.84
TRERF1Q96PN7 Y_RNA.73-201ENST00000362910 113 ntBASIC3.58□□□□□ -1.84
TRERF1Q96PN7 SNORA71.1-201ENST00000364523 117 ntBASIC3.58□□□□□ -1.84
TRERF1Q96PN7 SNORA14A-201ENST00000364773 135 ntBASIC3.58□□□□□ -1.84
TRERF1Q96PN7 SNORA54-201ENST00000384281 123 ntBASIC3.58□□□□□ -1.84
TRERF1Q96PN7 RNU6-1274P-201ENST00000384557 107 ntBASIC3.58□□□□□ -1.84
TRERF1Q96PN7 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
TRERF1Q96PN7 RN7SKP123-201ENST00000410732 291 ntBASIC3.58□□□□□ -1.84
TRERF1Q96PN7 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.58□□□□□ -1.84
TRERF1Q96PN7 AC008507.4-201ENST00000585464 127 ntBASIC3.58□□□□□ -1.84
TRERF1Q96PN7 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.58□□□□□ -1.84
TRERF1Q96PN7 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.58□□□□□ -1.84
TRERF1Q96PN7 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.58□□□□□ -1.84
TRERF1Q96PN7 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.58□□□□□ -1.84
TRERF1Q96PN7 ZNF720P1-201ENST00000562403 1939 ntBASIC3.58□□□□□ -1.84
TRERF1Q96PN7 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
TRERF1Q96PN7 RNU6-349P-201ENST00000362402 107 ntBASIC3.57□□□□□ -1.84
TRERF1Q96PN7 Y_RNA.244-201ENST00000364484 109 ntBASIC3.57□□□□□ -1.84
TRERF1Q96PN7 Y_RNA.298-201ENST00000364960 107 ntBASIC3.57□□□□□ -1.84
TRERF1Q96PN7 RN7SKP220-201ENST00000410611 288 ntBASIC3.57□□□□□ -1.84
TRERF1Q96PN7 AC097463.2-201ENST00000421074 142 ntBASIC3.57□□□□□ -1.84
TRERF1Q96PN7 SNRPGP10-201ENST00000432323 225 ntBASIC3.57□□□□□ -1.84
TRERF1Q96PN7 AC244505.4-201ENST00000434905 287 ntBASIC3.57□□□□□ -1.84
TRERF1Q96PN7 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.57□□□□□ -1.84
TRERF1Q96PN7 AL353689.1-201ENST00000438895 199 ntBASIC3.57□□□□□ -1.84
TRERF1Q96PN7 SSXP5-201ENST00000443473 287 ntBASIC3.57□□□□□ -1.84
TRERF1Q96PN7 RN7SL75P-201ENST00000461926 281 ntBASIC3.57□□□□□ -1.84
TRERF1Q96PN7 AC007229.1-201ENST00000590455 412 ntBASIC3.57□□□□□ -1.84
TRERF1Q96PN7 AC021443.1-201ENST00000604478 211 ntBASIC3.57□□□□□ -1.84
TRERF1Q96PN7 UCA1.1-201ENST00000620952 75 ntBASIC3.57□□□□□ -1.84
TRERF1Q96PN7 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
TRERF1Q96PN7 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
TRERF1Q96PN7 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
TRERF1Q96PN7 RNY3P2-201ENST00000362918 102 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 RNU6-1125P-201ENST00000363601 107 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 SNORA80A-201ENST00000363922 136 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 Y_RNA.253-201ENST00000364562 112 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 RNU6-497P-201ENST00000365316 104 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 MIR759-201ENST00000390224 91 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 SNORD67-201ENST00000390833 111 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 SNRPGP13-201ENST00000442212 177 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.56□□□□□ -1.84
TRERF1Q96PN7 RPL39P39-201ENST00000455840 151 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 HMGN1P7-201ENST00000491722 313 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 RNU6-521P-201ENST00000516663 105 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 RN7SKP282-201ENST00000516824 299 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.56□□□□□ -1.84
TRERF1Q96PN7 AC090115.4-201ENST00000609970 188 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
TRERF1Q96PN7 AL137790.1-201ENST00000634283 177 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 MIR3202-2-201ENST00000635980 79 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 AL162726.3-218ENST00000636401 95 ntBASIC3.56□□□□□ -1.84
TRERF1Q96PN7 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
TRERF1Q96PN7 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.56□□□□□ -1.84
TRERF1Q96PN7 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
TRERF1Q96PN7 RNA5SP295-201ENST00000362655 121 ntBASIC3.55□□□□□ -1.84
TRERF1Q96PN7 CD24P4-201ENST00000382840 243 ntBASIC3.55□□□□□ -1.84
TRERF1Q96PN7 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
TRERF1Q96PN7 ATP6V0E1P1-201ENST00000412537 226 ntBASIC3.55□□□□□ -1.84
TRERF1Q96PN7 RPL39P25-201ENST00000449384 154 ntBASIC3.55□□□□□ -1.84
TRERF1Q96PN7 RPS29P21-201ENST00000496272 170 ntBASIC3.55□□□□□ -1.84
TRERF1Q96PN7 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC3.55□□□□□ -1.84
TRERF1Q96PN7 RNU2-13P-201ENST00000515909 113 ntBASIC3.55□□□□□ -1.84
TRERF1Q96PN7 RNU7-123P-201ENST00000515911 60 ntBASIC3.55□□□□□ -1.84
TRERF1Q96PN7 SCARNA23-201ENST00000516060 130 ntBASIC3.55□□□□□ -1.84
TRERF1Q96PN7 AC022254.1-201ENST00000567857 235 ntBASIC3.55□□□□□ -1.84
TRERF1Q96PN7 MIR4765-201ENST00000585007 77 ntBASIC3.55□□□□□ -1.84
TRERF1Q96PN7 uc_338.14-201ENST00000613162 166 ntBASIC3.55□□□□□ -1.84
TRERF1Q96PN7 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
TRERF1Q96PN7 AL365361.1-201ENST00000566942 3481 ntBASIC3.54□□□□□ -1.84
TRERF1Q96PN7 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
TRERF1Q96PN7 MIR22-201ENST00000362190 85 ntBASIC3.54□□□□□ -1.84
TRERF1Q96PN7 RNU6-787P-201ENST00000384032 107 ntBASIC3.54□□□□□ -1.84
TRERF1Q96PN7 RNU6-1328P-201ENST00000410938 106 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms