Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
NKX6-3A6NJ46 MIR3937-201ENST00000580135 106 ntBASIC1.33□□□□□ -2.2
NKX6-3A6NJ46 MIR4680-201ENST00000580906 66 ntBASIC1.33□□□□□ -2.2
NKX6-3A6NJ46 MIR4300-201ENST00000581016 96 ntBASIC1.33□□□□□ -2.2
NKX6-3A6NJ46 AC044792.1-201ENST00000593294 196 ntBASIC1.33□□□□□ -2.2
NKX6-3A6NJ46 AL365434.2-201ENST00000607979 234 ntBASIC1.33□□□□□ -2.2
NKX6-3A6NJ46 AC004832.4-201ENST00000608952 331 ntBASIC1.33□□□□□ -2.2
NKX6-3A6NJ46 MIR376A1-201ENST00000616574 68 ntBASIC1.33□□□□□ -2.2
NKX6-3A6NJ46 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
NKX6-3A6NJ46 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
NKX6-3A6NJ46 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 Y_RNA.11-201ENST00000362375 109 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 Y_RNA.105-201ENST00000363182 111 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 Y_RNA.158-201ENST00000363651 101 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 Y_RNA.210-201ENST00000364161 110 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 Y_RNA.383-201ENST00000383855 97 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 SNORD63-201ENST00000384262 68 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 RNU11-5P-201ENST00000391216 129 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 MIR1252-201ENST00000408861 65 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 AL390729.2-201ENST00000416137 156 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 AL135790.2-201ENST00000437701 267 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 POLR2KP2-201ENST00000438155 177 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 AC093850.1-201ENST00000454121 251 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 AC023790.1-201ENST00000482174 347 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 AC079140.2-201ENST00000506193 142 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 RNY3P15-201ENST00000516297 97 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 RNA5SP168-201ENST00000516642 112 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 SNORA40.15-201ENST00000516884 107 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 RNU6-1137P-201ENST00000517073 99 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 Y_RNA.721-201ENST00000517207 102 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 RNU6-1116P-201ENST00000517269 99 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 AC015688.6-201ENST00000577737 104 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 SNORA28-201ENST00000606769 126 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 AC073349.3-201ENST00000617616 186 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 AC022140.2-201ENST00000623500 188 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 AC068647.2-201ENST00000637380 353 ntBASIC1.32□□□□□ -2.2
NKX6-3A6NJ46 SNORD114-7-201ENST00000362520 77 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 RNU4-80P-201ENST00000363200 141 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 SNORD68-201ENST00000363214 84 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 RNU6-457P-201ENST00000363999 107 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 RNU4-41P-201ENST00000364426 143 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 Y_RNA.341-201ENST00000365341 102 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 Y_RNA.455-201ENST00000384230 98 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 MIR517C-201ENST00000385103 95 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 SNORA67.6-201ENST00000391093 99 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 U8.16-201ENST00000391279 133 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 AC108667.1-201ENST00000428618 249 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 AC005534.2-201ENST00000431047 433 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 HSPE1P13-201ENST00000451143 297 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 RPS20P10-201ENST00000451209 253 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 AC131281.1-201ENST00000522984 164 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 AC011604.1-201ENST00000545978 196 ntBASIC1.31□□□□□ -2.2
NKX6-3A6NJ46 MIR302D-201ENST00000362275 68 ntBASIC1.3□□□□□ -2.2
NKX6-3A6NJ46 RNU6-1123P-201ENST00000362347 106 ntBASIC1.3□□□□□ -2.2
NKX6-3A6NJ46 RNU6-806P-201ENST00000365147 105 ntBASIC1.3□□□□□ -2.2
NKX6-3A6NJ46 SNORA63.7-201ENST00000365579 123 ntBASIC1.3□□□□□ -2.2
NKX6-3A6NJ46 MLLT10P1-201ENST00000418346 262 ntBASIC1.3□□□□□ -2.2
NKX6-3A6NJ46 ELOCP20-201ENST00000422460 345 ntBASIC1.3□□□□□ -2.2
NKX6-3A6NJ46 RPS29P23-201ENST00000458635 123 ntBASIC1.3□□□□□ -2.2
NKX6-3A6NJ46 AC098869.1-201ENST00000481627 292 ntBASIC1.3□□□□□ -2.2
NKX6-3A6NJ46 OR9P1P-201ENST00000496431 281 ntBASIC1.3□□□□□ -2.2
NKX6-3A6NJ46 SEPT14P8-201ENST00000508026 178 ntBASIC1.3□□□□□ -2.2
NKX6-3A6NJ46 AC113195.1-201ENST00000579952 141 ntBASIC1.3□□□□□ -2.2
NKX6-3A6NJ46 SNORD113-5-201ENST00000607261 78 ntBASIC1.3□□□□□ -2.2
NKX6-3A6NJ46 Y_RNA.26-201ENST00000362539 101 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 Y_RNA.183-201ENST00000363882 113 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 RNU6-1048P-201ENST00000364054 107 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 SNORA33.2-201ENST00000365413 134 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 MIR562-201ENST00000384894 95 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 RNU1-78P-201ENST00000391248 165 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 AC024067.1-201ENST00000426199 223 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 Z98949.2-201ENST00000440996 144 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 RNU7-12P-201ENST00000516030 62 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 SNORA31.24-201ENST00000517232 57 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 MIR4422-201ENST00000581938 83 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 AL162424.1-201ENST00000602325 221 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 AC005972.2-201ENST00000604690 348 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 PRR13P7-201ENST00000605538 430 ntBASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.29□□□□□ -2.2
NKX6-3A6NJ46 Y_RNA.19-201ENST00000362462 99 ntBASIC1.28□□□□□ -2.2
NKX6-3A6NJ46 Y_RNA.214-201ENST00000364201 112 ntBASIC1.28□□□□□ -2.2
NKX6-3A6NJ46 RNU6-1227P-201ENST00000383981 107 ntBASIC1.28□□□□□ -2.2
NKX6-3A6NJ46 MIR660-201ENST00000385235 97 ntBASIC1.28□□□□□ -2.2
NKX6-3A6NJ46 RNA5SP482-201ENST00000391269 118 ntBASIC1.28□□□□□ -2.2
NKX6-3A6NJ46 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.28□□□□□ -2.2
NKX6-3A6NJ46 RNU6-710P-201ENST00000410424 105 ntBASIC1.28□□□□□ -2.2
NKX6-3A6NJ46 RNU6-121P-201ENST00000410525 99 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms