Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 MIR340-201ENST00000362125 95 ntBASIC3.18□□□□□ -1.9
TRIM56Q9BRZ2 RNU1-96P-201ENST00000364163 162 ntBASIC3.18□□□□□ -1.9
TRIM56Q9BRZ2 SNORA25B-201ENST00000365507 128 ntBASIC3.18□□□□□ -1.9
TRIM56Q9BRZ2 MIR592-201ENST00000384959 97 ntBASIC3.18□□□□□ -1.9
TRIM56Q9BRZ2 MIR627-201ENST00000384979 97 ntBASIC3.18□□□□□ -1.9
TRIM56Q9BRZ2 SNORA48.8-201ENST00000391324 134 ntBASIC3.18□□□□□ -1.9
TRIM56Q9BRZ2 AC244505.4-201ENST00000434905 287 ntBASIC3.18□□□□□ -1.9
TRIM56Q9BRZ2 SSXP5-201ENST00000443473 287 ntBASIC3.18□□□□□ -1.9
TRIM56Q9BRZ2 SNORD33.1-201ENST00000516213 88 ntBASIC3.18□□□□□ -1.9
TRIM56Q9BRZ2 AC007229.1-201ENST00000590455 412 ntBASIC3.18□□□□□ -1.9
TRIM56Q9BRZ2 MIR7112-201ENST00000616126 65 ntBASIC3.18□□□□□ -1.9
TRIM56Q9BRZ2 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.18□□□□□ -1.9
TRIM56Q9BRZ2 AC093831.2-201ENST00000624393 3427 ntBASIC3.18□□□□□ -1.9
TRIM56Q9BRZ2 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
TRIM56Q9BRZ2 Y_RNA.242-201ENST00000364473 110 ntBASIC3.17□□□□□ -1.9
TRIM56Q9BRZ2 SNORD58C-201ENST00000365223 64 ntBASIC3.17□□□□□ -1.9
TRIM56Q9BRZ2 EDDM3CP-201ENST00000415977 425 ntBASIC3.17□□□□□ -1.9
TRIM56Q9BRZ2 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.17□□□□□ -1.9
TRIM56Q9BRZ2 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.17□□□□□ -1.9
TRIM56Q9BRZ2 AL445687.1-201ENST00000439946 251 ntBASIC3.17□□□□□ -1.9
TRIM56Q9BRZ2 RNU6-504P-201ENST00000516568 104 ntBASIC3.17□□□□□ -1.9
TRIM56Q9BRZ2 MIR4298-201ENST00000584380 73 ntBASIC3.17□□□□□ -1.9
TRIM56Q9BRZ2 AC091178.2-201ENST00000584401 117 ntBASIC3.17□□□□□ -1.9
TRIM56Q9BRZ2 AC073413.2-201ENST00000604332 360 ntBASIC3.17□□□□□ -1.9
TRIM56Q9BRZ2 AC108081.1-201ENST00000604358 221 ntBASIC3.17□□□□□ -1.9
TRIM56Q9BRZ2 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC3.17□□□□□ -1.9
TRIM56Q9BRZ2 MAPK10-266ENST00000641066 6555 ntBASIC3.17□□□□□ -1.9
TRIM56Q9BRZ2 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 Y_RNA.52-201ENST00000362760 96 ntBASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 snoU2-30.2-201ENST00000362805 70 ntBASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 SNORA22-201ENST00000383907 134 ntBASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 SNORA46-201ENST00000384762 135 ntBASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 MIR548A3-201ENST00000385297 97 ntBASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 Y_RNA.617-201ENST00000410920 90 ntBASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 RN7SKP284-201ENST00000411002 343 ntBASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 AC009238.1-201ENST00000442165 424 ntBASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 AC009237.6-201ENST00000446969 424 ntBASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 RPS26P45-201ENST00000471748 340 ntBASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 HMGN1P7-201ENST00000491722 313 ntBASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 RNU1-104P-201ENST00000517280 175 ntBASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 RNU2-60P-201ENST00000517290 128 ntBASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
TRIM56Q9BRZ2 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.9
TRIM56Q9BRZ2 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 Y_RNA.66-201ENST00000362862 102 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 RNA5SP125-201ENST00000364843 120 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 Y_RNA.346-201ENST00000365385 112 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 Y_RNA.486-201ENST00000384398 107 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 MIR515-2-201ENST00000384883 83 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 MIR515-1-201ENST00000384884 83 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 SNORD67-201ENST00000390833 111 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 MIR891A-201ENST00000401237 79 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 RNU6-1186P-201ENST00000410429 97 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 AC060773.1-201ENST00000421698 310 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 AC018634.1-201ENST00000437554 401 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 AL049873.1-201ENST00000480540 376 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 RN7SL636P-201ENST00000497504 294 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 AC011406.1-201ENST00000512440 370 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 RNU7-99P-201ENST00000516271 62 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 AC007751.1-201ENST00000529260 376 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 MIR4506-201ENST00000584693 77 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 AL121890.5-201ENST00000620848 304 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 SCARNA15.3-201ENST00000626315 122 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 SCARNA4.1-201ENST00000628597 123 ntBASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
TRIM56Q9BRZ2 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
TRIM56Q9BRZ2 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
TRIM56Q9BRZ2 SNORD116-21-201ENST00000384507 92 ntBASIC3.14□□□□□ -1.91
TRIM56Q9BRZ2 UQCRHP3-201ENST00000451503 251 ntBASIC3.14□□□□□ -1.91
TRIM56Q9BRZ2 RN7SL20P-201ENST00000488827 297 ntBASIC3.14□□□□□ -1.91
TRIM56Q9BRZ2 MIR5004-201ENST00000579078 107 ntBASIC3.14□□□□□ -1.91
TRIM56Q9BRZ2 MIR4325-201ENST00000583049 90 ntBASIC3.14□□□□□ -1.91
TRIM56Q9BRZ2 UBL5P2-201ENST00000583788 219 ntBASIC3.14□□□□□ -1.91
TRIM56Q9BRZ2 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
TRIM56Q9BRZ2 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
TRIM56Q9BRZ2 AC018630.2-201ENST00000534866 2403 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 RNU6-309P-201ENST00000364573 106 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 RNU6-160P-201ENST00000384591 107 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 AL031121.1-201ENST00000406553 254 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 RN7SKP220-201ENST00000410611 288 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 Y_RNA.630-201ENST00000411370 108 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 AC063976.4-201ENST00000421971 163 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 TRIAP1P1-201ENST00000427062 225 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 AF228730.3-201ENST00000436691 102 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 AC006028.1-201ENST00000438379 402 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 RNA5SP385-201ENST00000515947 110 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 MIR5680-201ENST00000577577 84 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 AL022345.2-201ENST00000606307 135 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 AL359075.3-201ENST00000613288 217 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 AC108206.1-201ENST00000570186 4159 ntBASIC3.13□□□□□ -1.91
TRIM56Q9BRZ2 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
TRIM56Q9BRZ2 AC073325.2-201ENST00000339545 159 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 216.8 ms