Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 HMGN2P34-201ENST00000437647 269 ntBASIC3.29□□□□□ -1.88
ZKSCAN3Q9BRR0 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.29□□□□□ -1.88
ZKSCAN3Q9BRR0 AC023141.11-201ENST00000508864 202 ntBASIC3.29□□□□□ -1.88
ZKSCAN3Q9BRR0 RNU6-991P-201ENST00000516168 107 ntBASIC3.29□□□□□ -1.88
ZKSCAN3Q9BRR0 GTF3AP2-201ENST00000557014 266 ntBASIC3.29□□□□□ -1.88
ZKSCAN3Q9BRR0 AC133485.4-201ENST00000561835 220 ntBASIC3.29□□□□□ -1.88
ZKSCAN3Q9BRR0 AC138907.4-201ENST00000570107 226 ntBASIC3.29□□□□□ -1.88
ZKSCAN3Q9BRR0 MIR7106-201ENST00000612419 65 ntBASIC3.29□□□□□ -1.88
ZKSCAN3Q9BRR0 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3.29□□□□□ -1.88
ZKSCAN3Q9BRR0 AL391516.1-201ENST00000554380 2449 ntBASIC3.29□□□□□ -1.88
ZKSCAN3Q9BRR0 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
ZKSCAN3Q9BRR0 SNORA63.4-201ENST00000362763 126 ntBASIC3.28□□□□□ -1.88
ZKSCAN3Q9BRR0 SNORA40.5-201ENST00000391061 128 ntBASIC3.28□□□□□ -1.88
ZKSCAN3Q9BRR0 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.28□□□□□ -1.88
ZKSCAN3Q9BRR0 AL513477.1-202ENST00000417061 214 ntBASIC3.28□□□□□ -1.88
ZKSCAN3Q9BRR0 TRIAP1P1-201ENST00000427062 225 ntBASIC3.28□□□□□ -1.88
ZKSCAN3Q9BRR0 AC105272.1-201ENST00000438604 198 ntBASIC3.28□□□□□ -1.88
ZKSCAN3Q9BRR0 AC003982.1-202ENST00000469928 248 ntBASIC3.28□□□□□ -1.88
ZKSCAN3Q9BRR0 SNORA18.4-201ENST00000516440 124 ntBASIC3.28□□□□□ -1.88
ZKSCAN3Q9BRR0 Y_RNA.690-201ENST00000516603 95 ntBASIC3.28□□□□□ -1.88
ZKSCAN3Q9BRR0 NDUFA5P6-201ENST00000542110 379 ntBASIC3.28□□□□□ -1.88
ZKSCAN3Q9BRR0 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.28□□□□□ -1.88
ZKSCAN3Q9BRR0 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
ZKSCAN3Q9BRR0 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
ZKSCAN3Q9BRR0 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.27□□□□□ -1.89
ZKSCAN3Q9BRR0 RNU1-96P-201ENST00000364163 162 ntBASIC3.27□□□□□ -1.89
ZKSCAN3Q9BRR0 RNU6-647P-201ENST00000364243 107 ntBASIC3.27□□□□□ -1.89
ZKSCAN3Q9BRR0 MIR624-201ENST00000385217 97 ntBASIC3.27□□□□□ -1.89
ZKSCAN3Q9BRR0 RNA5SP127-201ENST00000411051 133 ntBASIC3.27□□□□□ -1.89
ZKSCAN3Q9BRR0 RPS15AP28-201ENST00000435088 386 ntBASIC3.27□□□□□ -1.89
ZKSCAN3Q9BRR0 CYCTP-201ENST00000504253 315 ntBASIC3.27□□□□□ -1.89
ZKSCAN3Q9BRR0 RNU6-1061P-201ENST00000516530 99 ntBASIC3.27□□□□□ -1.89
ZKSCAN3Q9BRR0 RNU6-365P-201ENST00000517113 106 ntBASIC3.27□□□□□ -1.89
ZKSCAN3Q9BRR0 AL365205.2-201ENST00000594586 68 ntBASIC3.27□□□□□ -1.89
ZKSCAN3Q9BRR0 AC073413.2-201ENST00000604332 360 ntBASIC3.27□□□□□ -1.89
ZKSCAN3Q9BRR0 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
ZKSCAN3Q9BRR0 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
ZKSCAN3Q9BRR0 AL161431.1-201ENST00000618966 4205 ntBASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 AC093010.3-201ENST00000570269 15214 ntBASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 snoU2-30.2-201ENST00000362805 70 ntBASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 Y_RNA.621-201ENST00000411065 96 ntBASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 AC060773.1-201ENST00000421698 310 ntBASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 RPS29P12-201ENST00000460178 152 ntBASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 AC006483.1-201ENST00000487308 313 ntBASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 RNU5E-3P-201ENST00000515913 68 ntBASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 RNU7-99P-201ENST00000516271 62 ntBASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 RNU6-589P-201ENST00000516485 107 ntBASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 RNA5SP380-201ENST00000517190 98 ntBASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 ZNF861P-201ENST00000588126 639 ntBASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 AC007229.1-201ENST00000590455 412 ntBASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
ZKSCAN3Q9BRR0 MIR340-201ENST00000362125 95 ntBASIC3.25□□□□□ -1.89
ZKSCAN3Q9BRR0 Y_RNA.486-201ENST00000384398 107 ntBASIC3.25□□□□□ -1.89
ZKSCAN3Q9BRR0 AL138827.1-201ENST00000402666 306 ntBASIC3.25□□□□□ -1.89
ZKSCAN3Q9BRR0 RNU6-1186P-201ENST00000410429 97 ntBASIC3.25□□□□□ -1.89
ZKSCAN3Q9BRR0 RNU2-48P-201ENST00000410694 191 ntBASIC3.25□□□□□ -1.89
ZKSCAN3Q9BRR0 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.25□□□□□ -1.89
ZKSCAN3Q9BRR0 AC244505.4-201ENST00000434905 287 ntBASIC3.25□□□□□ -1.89
ZKSCAN3Q9BRR0 SSXP5-201ENST00000443473 287 ntBASIC3.25□□□□□ -1.89
ZKSCAN3Q9BRR0 RNU2-60P-201ENST00000517290 128 ntBASIC3.25□□□□□ -1.89
ZKSCAN3Q9BRR0 AL355297.2-201ENST00000604792 129 ntBASIC3.25□□□□□ -1.89
ZKSCAN3Q9BRR0 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
ZKSCAN3Q9BRR0 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
ZKSCAN3Q9BRR0 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.25□□□□□ -1.89
ZKSCAN3Q9BRR0 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 Y_RNA.52-201ENST00000362760 96 ntBASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 Y_RNA.66-201ENST00000362862 102 ntBASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 SNORA5B-201ENST00000363786 132 ntBASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 RNU6-755P-201ENST00000364400 103 ntBASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 MIR561-201ENST00000385216 97 ntBASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 MIR181B1-201ENST00000385240 110 ntBASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 HMGN1P7-201ENST00000491722 313 ntBASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 AC011406.1-201ENST00000512440 370 ntBASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 SNORD33.1-201ENST00000516213 88 ntBASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 RNU6-504P-201ENST00000516568 104 ntBASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 AC007751.1-201ENST00000529260 376 ntBASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 AL670379.3-201ENST00000605040 251 ntBASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC3.24□□□□□ -1.89
ZKSCAN3Q9BRR0 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
ZKSCAN3Q9BRR0 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
ZKSCAN3Q9BRR0 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.23□□□□□ -1.89
ZKSCAN3Q9BRR0 SNORD58C-201ENST00000365223 64 ntBASIC3.23□□□□□ -1.89
ZKSCAN3Q9BRR0 MIR891A-201ENST00000401237 79 ntBASIC3.23□□□□□ -1.89
ZKSCAN3Q9BRR0 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.23□□□□□ -1.89
ZKSCAN3Q9BRR0 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC3.23□□□□□ -1.89
ZKSCAN3Q9BRR0 MTATP6P21-201ENST00000440681 189 ntBASIC3.23□□□□□ -1.89
ZKSCAN3Q9BRR0 AC108938.1-201ENST00000451204 136 ntBASIC3.23□□□□□ -1.89
ZKSCAN3Q9BRR0 RNA5SP356-201ENST00000515972 94 ntBASIC3.23□□□□□ -1.89
ZKSCAN3Q9BRR0 RNU1-104P-201ENST00000517280 175 ntBASIC3.23□□□□□ -1.89
ZKSCAN3Q9BRR0 AC091178.2-201ENST00000584401 117 ntBASIC3.23□□□□□ -1.89
ZKSCAN3Q9BRR0 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
ZKSCAN3Q9BRR0 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
ZKSCAN3Q9BRR0 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
ZKSCAN3Q9BRR0 AC018630.2-201ENST00000534866 2403 ntBASIC3.22□□□□□ -1.89
ZKSCAN3Q9BRR0 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 212.3 ms