Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 MT-TD-201ENST00000387419 68 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
SSX3Q99909 RNA5SP482-201ENST00000391269 118 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 MIR1323-201ENST00000408090 73 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 MIR1304-201ENST00000408243 91 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 RNU5A-5P-201ENST00000411054 116 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 RPL23AP36-201ENST00000413895 458 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 AF228730.4-201ENST00000421457 183 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 CALM2P4-201ENST00000430810 426 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 HSPE1P13-201ENST00000451143 297 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 AL049830.1-201ENST00000468034 425 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 AL163540.1-201ENST00000485382 386 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 OR9P1P-201ENST00000496431 281 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 RNU6-976P-201ENST00000516086 111 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 RNU7-40P-201ENST00000516397 64 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 RNA5SP61-201ENST00000516453 100 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 RNU1-92P-201ENST00000517017 135 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 SNORA31.24-201ENST00000517232 57 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 AP001094.1-201ENST00000579805 193 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 MIR4795-201ENST00000584182 89 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 AC104985.2-201ENST00000620598 500 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.22□□□□□ -2.21
SSX3Q99909 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
SSX3Q99909 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
SSX3Q99909 AC005592.1-201ENST00000566527 1640 ntBASIC1.22□□□□□ -2.21
SSX3Q99909 Y_RNA.446-201ENST00000384178 104 ntBASIC1.21□□□□□ -2.22
SSX3Q99909 RNU6-424P-201ENST00000384367 105 ntBASIC1.21□□□□□ -2.22
SSX3Q99909 Y_RNA.496-201ENST00000384444 101 ntBASIC1.21□□□□□ -2.22
SSX3Q99909 RNU6-939P-201ENST00000384634 107 ntBASIC1.21□□□□□ -2.22
SSX3Q99909 U8.16-201ENST00000391279 133 ntBASIC1.21□□□□□ -2.22
SSX3Q99909 RNA5SP511-201ENST00000410487 115 ntBASIC1.21□□□□□ -2.22
SSX3Q99909 AL354751.2-201ENST00000415471 210 ntBASIC1.21□□□□□ -2.22
SSX3Q99909 AP1B1P2-201ENST00000416196 106 ntBASIC1.21□□□□□ -2.22
SSX3Q99909 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.21□□□□□ -2.22
SSX3Q99909 RPL39P38-201ENST00000467018 153 ntBASIC1.21□□□□□ -2.22
SSX3Q99909 AC092991.1-201ENST00000477176 376 ntBASIC1.21□□□□□ -2.22
SSX3Q99909 Y_RNA.675-201ENST00000516389 149 ntBASIC1.21□□□□□ -2.22
SSX3Q99909 AL358944.1-201ENST00000528537 144 ntBASIC1.21□□□□□ -2.22
SSX3Q99909 DNAJC19P9-201ENST00000555084 351 ntBASIC1.21□□□□□ -2.22
SSX3Q99909 MIR3664-201ENST00000579074 99 ntBASIC1.21□□□□□ -2.22
SSX3Q99909 AC091925.1-201ENST00000623204 462 ntBASIC1.21□□□□□ -2.22
SSX3Q99909 RNU6-199P-201ENST00000362954 107 ntBASIC1.2□□□□□ -2.22
SSX3Q99909 RNU4-13P-201ENST00000364019 141 ntBASIC1.2□□□□□ -2.22
SSX3Q99909 Y_RNA.252-201ENST00000364556 101 ntBASIC1.2□□□□□ -2.22
SSX3Q99909 AL354695.1-201ENST00000427935 228 ntBASIC1.2□□□□□ -2.22
SSX3Q99909 AL162725.1-201ENST00000435405 301 ntBASIC1.2□□□□□ -2.22
SSX3Q99909 AC015922.2-201ENST00000435593 184 ntBASIC1.2□□□□□ -2.22
SSX3Q99909 RNU7-12P-201ENST00000516030 62 ntBASIC1.2□□□□□ -2.22
SSX3Q99909 RPS29P30-201ENST00000600975 111 ntBASIC1.2□□□□□ -2.22
SSX3Q99909 snoU13.31-201ENST00000607291 104 ntBASIC1.2□□□□□ -2.22
SSX3Q99909 AC068647.2-201ENST00000637380 353 ntBASIC1.2□□□□□ -2.22
SSX3Q99909 ZNF209P-201ENST00000593450 2304 ntBASIC1.2□□□□□ -2.22
SSX3Q99909 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SSX3Q99909 RNU1-115P-201ENST00000365329 160 ntBASIC1.19□□□□□ -2.22
SSX3Q99909 MIR618-201ENST00000385287 98 ntBASIC1.19□□□□□ -2.22
SSX3Q99909 Y_RNA.579-201ENST00000390939 94 ntBASIC1.19□□□□□ -2.22
SSX3Q99909 Y_RNA.621-201ENST00000411065 96 ntBASIC1.19□□□□□ -2.22
SSX3Q99909 RNU6-1199P-201ENST00000411249 104 ntBASIC1.19□□□□□ -2.22
SSX3Q99909 AL160004.2-201ENST00000432935 350 ntBASIC1.19□□□□□ -2.22
SSX3Q99909 RPEP5-201ENST00000441137 268 ntBASIC1.19□□□□□ -2.22
SSX3Q99909 AC009474.2-201ENST00000451383 136 ntBASIC1.19□□□□□ -2.22
SSX3Q99909 RNU7-95P-201ENST00000459222 64 ntBASIC1.19□□□□□ -2.22
SSX3Q99909 RNU4-77P-201ENST00000516692 156 ntBASIC1.19□□□□□ -2.22
SSX3Q99909 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.19□□□□□ -2.22
SSX3Q99909 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.19□□□□□ -2.22
SSX3Q99909 MIR4498-201ENST00000577599 66 ntBASIC1.19□□□□□ -2.22
SSX3Q99909 MIR5188-201ENST00000583467 113 ntBASIC1.19□□□□□ -2.22
SSX3Q99909 AC022441.3-201ENST00000605737 136 ntBASIC1.19□□□□□ -2.22
SSX3Q99909 Y_RNA.772-201ENST00000606692 102 ntBASIC1.19□□□□□ -2.22
SSX3Q99909 AL606534.2-204ENST00000635008 178 ntBASIC1.19□□□□□ -2.22
SSX3Q99909 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.18□□□□□ -2.22
SSX3Q99909 Y_RNA.5-201ENST00000362334 102 ntBASIC1.18□□□□□ -2.22
SSX3Q99909 RNU4-79P-201ENST00000362764 141 ntBASIC1.18□□□□□ -2.22
SSX3Q99909 RNU6-1175P-201ENST00000365200 107 ntBASIC1.18□□□□□ -2.22
SSX3Q99909 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.18□□□□□ -2.22
SSX3Q99909 RNU2-61P-201ENST00000411069 191 ntBASIC1.18□□□□□ -2.22
SSX3Q99909 SNRPGP13-201ENST00000442212 177 ntBASIC1.18□□□□□ -2.22
SSX3Q99909 RPS4XP11-201ENST00000446897 772 ntBASIC1.18□□□□□ -2.22
SSX3Q99909 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.18□□□□□ -2.22
SSX3Q99909 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.18□□□□□ -2.22
SSX3Q99909 RNU6-436P-201ENST00000516171 114 ntBASIC1.18□□□□□ -2.22
SSX3Q99909 RNU6-922P-201ENST00000516753 99 ntBASIC1.18□□□□□ -2.22
SSX3Q99909 RN7SKP295-201ENST00000517264 153 ntBASIC1.18□□□□□ -2.22
SSX3Q99909 AL513534.2-201ENST00000603836 250 ntBASIC1.18□□□□□ -2.22
SSX3Q99909 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.18□□□□□ -2.22
SSX3Q99909 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.17□□□□□ -2.22
SSX3Q99909 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
SSX3Q99909 Y_RNA.197-201ENST00000364004 102 ntBASIC1.17□□□□□ -2.22
SSX3Q99909 RNU4-41P-201ENST00000364426 143 ntBASIC1.17□□□□□ -2.22
SSX3Q99909 Y_RNA.315-201ENST00000365117 102 ntBASIC1.17□□□□□ -2.22
SSX3Q99909 SNORD116-13-201ENST00000384408 92 ntBASIC1.17□□□□□ -2.22
SSX3Q99909 MTND4LP11-201ENST00000422184 280 ntBASIC1.17□□□□□ -2.22
SSX3Q99909 MTATP6P23-201ENST00000440153 476 ntBASIC1.17□□□□□ -2.22
SSX3Q99909 Z98949.2-201ENST00000440996 144 ntBASIC1.17□□□□□ -2.22
SSX3Q99909 AC005042.3-201ENST00000453230 174 ntBASIC1.17□□□□□ -2.22
SSX3Q99909 RNU6-1053P-201ENST00000515930 101 ntBASIC1.17□□□□□ -2.22
SSX3Q99909 RNU6-966P-201ENST00000516479 104 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 189.2 ms