Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 AL445646.1-201ENST00000431784 216 ntBASIC3.62□□□□□ -1.83
NPAS3Q8IXF0 RPS12P2-201ENST00000439728 269 ntBASIC3.62□□□□□ -1.83
NPAS3Q8IXF0 RNU7-80P-201ENST00000459562 61 ntBASIC3.62□□□□□ -1.83
NPAS3Q8IXF0 AC006445.1-201ENST00000491925 405 ntBASIC3.62□□□□□ -1.83
NPAS3Q8IXF0 MIR4298-201ENST00000584380 73 ntBASIC3.62□□□□□ -1.83
NPAS3Q8IXF0 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.62□□□□□ -1.83
NPAS3Q8IXF0 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
NPAS3Q8IXF0 AC018630.2-201ENST00000534866 2403 ntBASIC3.62□□□□□ -1.83
NPAS3Q8IXF0 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.62□□□□□ -1.83
NPAS3Q8IXF0 OTUD4P1-201ENST00000237841 3067 ntBASIC3.62□□□□□ -1.83
NPAS3Q8IXF0 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
NPAS3Q8IXF0 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 Y_RNA.547-201ENST00000384654 119 ntBASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 MIR520G-201ENST00000385064 90 ntBASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 RN7SKP111-201ENST00000410349 271 ntBASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 SNRPGP5-201ENST00000456003 220 ntBASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 RN7SL504P-201ENST00000494496 287 ntBASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 PHBP14-201ENST00000512887 367 ntBASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 RN7SKP83-201ENST00000516512 178 ntBASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 IGHVII-40-1-201ENST00000517316 58 ntBASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 AC244205.2-202ENST00000635781 342 ntBASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.61□□□□□ -1.83
NPAS3Q8IXF0 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.6□□□□□ -1.83
NPAS3Q8IXF0 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
NPAS3Q8IXF0 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
NPAS3Q8IXF0 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
NPAS3Q8IXF0 MIR1265-201ENST00000408444 86 ntBASIC3.6□□□□□ -1.83
NPAS3Q8IXF0 AP003484.1-201ENST00000530974 250 ntBASIC3.6□□□□□ -1.83
NPAS3Q8IXF0 MIR5680-201ENST00000577577 84 ntBASIC3.6□□□□□ -1.83
NPAS3Q8IXF0 AL359075.3-201ENST00000613288 217 ntBASIC3.6□□□□□ -1.83
NPAS3Q8IXF0 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC3.6□□□□□ -1.83
NPAS3Q8IXF0 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.6□□□□□ -1.83
NPAS3Q8IXF0 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
NPAS3Q8IXF0 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
NPAS3Q8IXF0 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 MIR423-201ENST00000362201 94 ntBASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 RNA5SP374-201ENST00000362939 125 ntBASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 Y_RNA.267-201ENST00000364679 109 ntBASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 RNU6-1235P-201ENST00000384559 107 ntBASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 MIR519C-201ENST00000385053 87 ntBASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 RNU6-1186P-201ENST00000410429 97 ntBASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 RNU6-498P-201ENST00000459468 107 ntBASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 RN7SL594P-201ENST00000470590 287 ntBASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 HIGD1AP1-201ENST00000550979 275 ntBASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 AC078899.2-201ENST00000595282 212 ntBASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
NPAS3Q8IXF0 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.59□□□□□ -1.84
NPAS3Q8IXF0 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.59□□□□□ -1.84
NPAS3Q8IXF0 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 AL356274.2-201ENST00000624379 3752 ntBASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 Y_RNA.242-201ENST00000364473 110 ntBASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 Y_RNA.247-201ENST00000364500 92 ntBASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 SNORA1.1-201ENST00000364671 133 ntBASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 RNU6-234P-201ENST00000365229 104 ntBASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 MIR1294-201ENST00000408503 142 ntBASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 RPL31P63-201ENST00000422565 375 ntBASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 MIR4325-201ENST00000583049 90 ntBASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 MIR4439-201ENST00000583746 80 ntBASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 MIR4276-201ENST00000584832 70 ntBASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 AC008739.2-201ENST00000597006 317 ntBASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.58□□□□□ -1.84
NPAS3Q8IXF0 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 Y_RNA.57-201ENST00000362806 113 ntBASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 SNORD115-37-201ENST00000363768 82 ntBASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 SNORD31B-201ENST00000364977 69 ntBASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 AC090844.1-201ENST00000422019 156 ntBASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 snoU13.28-201ENST00000459235 104 ntBASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 AC084357.1-201ENST00000473404 255 ntBASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 CEP170P1-201ENST00000502249 4587 ntBASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 SNORD19.2-201ENST00000516978 73 ntBASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 MIR5004-201ENST00000579078 107 ntBASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 Z83843.1-201ENST00000604070 3685 ntBASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 MFSD8-233ENST00000641482 4860 ntBASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
NPAS3Q8IXF0 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms