Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RPL36AP21-201ENST00000490372 323 ntBASIC2.7□□□□□ -1.98
USP39Q53GS9 CYCTP-201ENST00000504253 315 ntBASIC2.7□□□□□ -1.98
USP39Q53GS9 SNORA9.3-201ENST00000516383 129 ntBASIC2.7□□□□□ -1.98
USP39Q53GS9 RNU6-589P-201ENST00000516485 107 ntBASIC2.7□□□□□ -1.98
USP39Q53GS9 SCARNA11.3-201ENST00000517276 130 ntBASIC2.7□□□□□ -1.98
USP39Q53GS9 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.7□□□□□ -1.98
USP39Q53GS9 MIR378D2-201ENST00000580636 98 ntBASIC2.7□□□□□ -1.98
USP39Q53GS9 MIR3914-2-201ENST00000637339 95 ntBASIC2.7□□□□□ -1.98
USP39Q53GS9 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.7□□□□□ -1.98
USP39Q53GS9 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.7□□□□□ -1.98
USP39Q53GS9 RNU6-235P-201ENST00000362644 107 ntBASIC2.69□□□□□ -1.98
USP39Q53GS9 SNORA40.5-201ENST00000391061 128 ntBASIC2.69□□□□□ -1.98
USP39Q53GS9 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC2.69□□□□□ -1.98
USP39Q53GS9 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.69□□□□□ -1.98
USP39Q53GS9 SNORD65B-201ENST00000459126 73 ntBASIC2.69□□□□□ -1.98
USP39Q53GS9 RPS26P55-201ENST00000471178 356 ntBASIC2.69□□□□□ -1.98
USP39Q53GS9 RN7SL297P-201ENST00000483161 293 ntBASIC2.69□□□□□ -1.98
USP39Q53GS9 RPL36AP48-201ENST00000485521 314 ntBASIC2.69□□□□□ -1.98
USP39Q53GS9 MIR3605-201ENST00000583214 100 ntBASIC2.69□□□□□ -1.98
USP39Q53GS9 POLR3GP1-201ENST00000594073 261 ntBASIC2.69□□□□□ -1.98
USP39Q53GS9 CTSLP2-204ENST00000629029 392 ntBASIC2.69□□□□□ -1.98
USP39Q53GS9 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
USP39Q53GS9 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.68□□□□□ -1.98
USP39Q53GS9 Y_RNA.43-201ENST00000362670 111 ntBASIC2.68□□□□□ -1.98
USP39Q53GS9 RNU6-484P-201ENST00000384016 107 ntBASIC2.68□□□□□ -1.98
USP39Q53GS9 SNORA67.4-201ENST00000384688 142 ntBASIC2.68□□□□□ -1.98
USP39Q53GS9 EIF4EP4-201ENST00000424916 578 ntBASIC2.68□□□□□ -1.98
USP39Q53GS9 SUMO1P4-201ENST00000429430 302 ntBASIC2.68□□□□□ -1.98
USP39Q53GS9 RNU6-437P-201ENST00000459408 95 ntBASIC2.68□□□□□ -1.98
USP39Q53GS9 MIR3613-201ENST00000579844 87 ntBASIC2.68□□□□□ -1.98
USP39Q53GS9 AL356280.1-201ENST00000603614 379 ntBASIC2.68□□□□□ -1.98
USP39Q53GS9 AC005972.2-201ENST00000604690 348 ntBASIC2.68□□□□□ -1.98
USP39Q53GS9 AL670379.2-201ENST00000604983 252 ntBASIC2.68□□□□□ -1.98
USP39Q53GS9 uc_338.14-201ENST00000613162 166 ntBASIC2.68□□□□□ -1.98
USP39Q53GS9 MIR7515-201ENST00000637837 67 ntBASIC2.68□□□□□ -1.98
USP39Q53GS9 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.68□□□□□ -1.98
USP39Q53GS9 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
USP39Q53GS9 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.67□□□□□ -1.98
USP39Q53GS9 AL356292.1-201ENST00000283110 373 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 U8.1-201ENST00000362843 134 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 RNU6-674P-201ENST00000363831 107 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 Y_RNA.584-201ENST00000391090 114 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 Y_RNA.587-201ENST00000391210 103 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 MIR1283-1-201ENST00000408494 87 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 AL135786.1-201ENST00000415892 214 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 AC104389.3-201ENST00000445629 235 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 snoU13.26-201ENST00000459452 105 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 RNU7-57P-201ENST00000459540 60 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.67□□□□□ -1.98
USP39Q53GS9 RNU6-772P-201ENST00000516042 105 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 RNU5F-4P-201ENST00000516581 114 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 RNU6-197P-201ENST00000516680 100 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.67□□□□□ -1.98
USP39Q53GS9 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.67□□□□□ -1.98
USP39Q53GS9 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.67□□□□□ -1.98
USP39Q53GS9 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 MIR7843-201ENST00000622274 79 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 MTND5P32-201ENST00000560711 1802 ntBASIC2.67□□□□□ -1.98
USP39Q53GS9 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
USP39Q53GS9 SNORD14D-201ENST00000384390 87 ntBASIC2.66□□□□□ -1.98
USP39Q53GS9 MIR504-201ENST00000385065 83 ntBASIC2.66□□□□□ -1.98
USP39Q53GS9 RNA5SP496-201ENST00000391240 109 ntBASIC2.66□□□□□ -1.98
USP39Q53GS9 RNU6-221P-201ENST00000459541 99 ntBASIC2.66□□□□□ -1.98
USP39Q53GS9 RPL23AP54-201ENST00000495129 419 ntBASIC2.66□□□□□ -1.98
USP39Q53GS9 AC010598.1-201ENST00000510378 103 ntBASIC2.66□□□□□ -1.98
USP39Q53GS9 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.66□□□□□ -1.98
USP39Q53GS9 RNU6-237P-201ENST00000515985 71 ntBASIC2.66□□□□□ -1.98
USP39Q53GS9 MIR449C-201ENST00000516047 92 ntBASIC2.66□□□□□ -1.98
USP39Q53GS9 RNU6-63P-201ENST00000516690 95 ntBASIC2.66□□□□□ -1.98
USP39Q53GS9 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
USP39Q53GS9 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
USP39Q53GS9 AL449363.1-201ENST00000617815 186 ntBASIC2.66□□□□□ -1.98
USP39Q53GS9 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.66□□□□□ -1.98
USP39Q53GS9 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.66□□□□□ -1.98
USP39Q53GS9 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
USP39Q53GS9 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
USP39Q53GS9 MIR592-201ENST00000384959 97 ntBASIC2.65□□□□□ -1.99
USP39Q53GS9 Y_RNA.630-201ENST00000411370 108 ntBASIC2.65□□□□□ -1.99
USP39Q53GS9 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.65□□□□□ -1.99
USP39Q53GS9 AC245047.4-201ENST00000433189 144 ntBASIC2.65□□□□□ -1.99
USP39Q53GS9 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC2.65□□□□□ -1.99
USP39Q53GS9 AC016925.1-201ENST00000458303 298 ntBASIC2.65□□□□□ -1.99
USP39Q53GS9 AC010531.2-201ENST00000465012 153 ntBASIC2.65□□□□□ -1.99
USP39Q53GS9 ATP5EP1-201ENST00000510257 156 ntBASIC2.65□□□□□ -1.99
USP39Q53GS9 RNU7-116P-201ENST00000516940 62 ntBASIC2.65□□□□□ -1.99
USP39Q53GS9 AC090142.3-201ENST00000519012 385 ntBASIC2.65□□□□□ -1.99
USP39Q53GS9 AL160236.1-201ENST00000556317 195 ntBASIC2.65□□□□□ -1.99
USP39Q53GS9 MIR4446-201ENST00000578505 67 ntBASIC2.65□□□□□ -1.99
USP39Q53GS9 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.65□□□□□ -1.99
USP39Q53GS9 snoZ196.1-201ENST00000625269 89 ntBASIC2.65□□□□□ -1.99
USP39Q53GS9 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.65□□□□□ -1.99
USP39Q53GS9 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.65□□□□□ -1.99
USP39Q53GS9 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.64□□□□□ -1.99
USP39Q53GS9 ZNF658B-202ENST00000615961 3375 ntBASIC2.64□□□□□ -1.99
USP39Q53GS9 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.64□□□□□ -1.99
USP39Q53GS9 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
USP39Q53GS9 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
USP39Q53GS9 RNU6-271P-201ENST00000363858 105 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 149 ms