Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC097639.2-201ENST00000603159 172 ntBASIC2.85□□□□□ -1.95
RNF4P78317 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.85□□□□□ -1.95
RNF4P78317 AL162274.2-201ENST00000614406 332 ntBASIC2.85□□□□□ -1.95
RNF4P78317 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC2.85□□□□□ -1.95
RNF4P78317 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.85□□□□□ -1.95
RNF4P78317 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
RNF4P78317 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
RNF4P78317 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.84□□□□□ -1.95
RNF4P78317 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.84□□□□□ -1.95
RNF4P78317 MIR22-201ENST00000362190 85 ntBASIC2.84□□□□□ -1.95
RNF4P78317 SNORA71.1-201ENST00000364523 117 ntBASIC2.84□□□□□ -1.95
RNF4P78317 RNU6-1138P-201ENST00000365359 106 ntBASIC2.84□□□□□ -1.95
RNF4P78317 SNORA8-201ENST00000384574 139 ntBASIC2.84□□□□□ -1.95
RNF4P78317 MRPS17P9-201ENST00000511924 393 ntBASIC2.84□□□□□ -1.95
RNF4P78317 RNU1-142P-201ENST00000516682 145 ntBASIC2.84□□□□□ -1.95
RNF4P78317 AL353149.1-201ENST00000610667 244 ntBASIC2.84□□□□□ -1.95
RNF4P78317 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
RNF4P78317 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.84□□□□□ -1.96
RNF4P78317 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
RNF4P78317 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
RNF4P78317 SNORD115-3-201ENST00000363100 82 ntBASIC2.83□□□□□ -1.96
RNF4P78317 RNU6-215P-201ENST00000365169 102 ntBASIC2.83□□□□□ -1.96
RNF4P78317 SNORA54-201ENST00000384281 123 ntBASIC2.83□□□□□ -1.96
RNF4P78317 MIR627-201ENST00000384979 97 ntBASIC2.83□□□□□ -1.96
RNF4P78317 SNORA48.2-201ENST00000390926 124 ntBASIC2.83□□□□□ -1.96
RNF4P78317 SNORA26-201ENST00000391286 122 ntBASIC2.83□□□□□ -1.96
RNF4P78317 AL117342.1-201ENST00000404861 406 ntBASIC2.83□□□□□ -1.96
RNF4P78317 TRBV12-1-201ENST00000479785 344 ntBASIC2.83□□□□□ -1.96
RNF4P78317 AC007751.1-201ENST00000529260 376 ntBASIC2.83□□□□□ -1.96
RNF4P78317 NDUFA5P6-201ENST00000542110 379 ntBASIC2.83□□□□□ -1.96
RNF4P78317 AC018630.2-201ENST00000534866 2403 ntBASIC2.83□□□□□ -1.96
RNF4P78317 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
RNF4P78317 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.83□□□□□ -1.96
RNF4P78317 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.82□□□□□ -1.96
RNF4P78317 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
RNF4P78317 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
RNF4P78317 RNU6-862P-201ENST00000362804 105 ntBASIC2.82□□□□□ -1.96
RNF4P78317 MIR128-1-201ENST00000384921 82 ntBASIC2.82□□□□□ -1.96
RNF4P78317 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
RNF4P78317 SNORD72-201ENST00000390994 80 ntBASIC2.82□□□□□ -1.96
RNF4P78317 MLLT10P1-201ENST00000418346 262 ntBASIC2.82□□□□□ -1.96
RNF4P78317 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.82□□□□□ -1.96
RNF4P78317 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.82□□□□□ -1.96
RNF4P78317 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.82□□□□□ -1.96
RNF4P78317 S100A11P2-201ENST00000467589 312 ntBASIC2.82□□□□□ -1.96
RNF4P78317 RNA5SP76-201ENST00000516277 87 ntBASIC2.82□□□□□ -1.96
RNF4P78317 RNU6-341P-201ENST00000516973 96 ntBASIC2.82□□□□□ -1.96
RNF4P78317 Y_RNA.757-201ENST00000578934 114 ntBASIC2.82□□□□□ -1.96
RNF4P78317 MIR4662B-201ENST00000579498 81 ntBASIC2.82□□□□□ -1.96
RNF4P78317 AC131055.1-201ENST00000584626 316 ntBASIC2.82□□□□□ -1.96
RNF4P78317 AC005000.2-201ENST00000605468 310 ntBASIC2.82□□□□□ -1.96
RNF4P78317 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.82□□□□□ -1.96
RNF4P78317 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
RNF4P78317 ZNF271P-202ENST00000465539 1970 ntBASIC2.81□□□□□ -1.96
RNF4P78317 MIR126-201ENST00000362291 85 ntBASIC2.81□□□□□ -1.96
RNF4P78317 SNORA1B-201ENST00000362535 133 ntBASIC2.81□□□□□ -1.96
RNF4P78317 Y_RNA.66-201ENST00000362862 102 ntBASIC2.81□□□□□ -1.96
RNF4P78317 RPL39P40-201ENST00000445481 146 ntBASIC2.81□□□□□ -1.96
RNF4P78317 AC104389.3-201ENST00000445629 235 ntBASIC2.81□□□□□ -1.96
RNF4P78317 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.81□□□□□ -1.96
RNF4P78317 RNU1-131P-201ENST00000458943 161 ntBASIC2.81□□□□□ -1.96
RNF4P78317 RN7SL636P-201ENST00000497504 294 ntBASIC2.81□□□□□ -1.96
RNF4P78317 RNU5E-3P-201ENST00000515913 68 ntBASIC2.81□□□□□ -1.96
RNF4P78317 RNU6-365P-201ENST00000517113 106 ntBASIC2.81□□□□□ -1.96
RNF4P78317 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.81□□□□□ -1.96
RNF4P78317 AC022217.4-201ENST00000604389 163 ntBASIC2.81□□□□□ -1.96
RNF4P78317 AL591926.4-201ENST00000616895 298 ntBASIC2.81□□□□□ -1.96
RNF4P78317 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.81□□□□□ -1.96
RNF4P78317 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.81□□□□□ -1.96
RNF4P78317 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.81□□□□□ -1.96
RNF4P78317 AL136360.1-201ENST00000503377 1900 ntBASIC2.81□□□□□ -1.96
RNF4P78317 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
RNF4P78317 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.81□□□□□ -1.96
RNF4P78317 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
RNF4P78317 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
RNF4P78317 AC073325.2-201ENST00000339545 159 ntBASIC2.8□□□□□ -1.96
RNF4P78317 RNU6-508P-201ENST00000363231 103 ntBASIC2.8□□□□□ -1.96
RNF4P78317 RNA5SP493-201ENST00000364115 91 ntBASIC2.8□□□□□ -1.96
RNF4P78317 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
RNF4P78317 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.8□□□□□ -1.96
RNF4P78317 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.8□□□□□ -1.96
RNF4P78317 RN7SL20P-201ENST00000488827 297 ntBASIC2.8□□□□□ -1.96
RNF4P78317 AC096725.1-201ENST00000514266 313 ntBASIC2.8□□□□□ -1.96
RNF4P78317 SCGB1D5P-201ENST00000515134 247 ntBASIC2.8□□□□□ -1.96
RNF4P78317 SNORA18.4-201ENST00000516440 124 ntBASIC2.8□□□□□ -1.96
RNF4P78317 RNU6-1270P-201ENST00000517128 108 ntBASIC2.8□□□□□ -1.96
RNF4P78317 RNU1-104P-201ENST00000517280 175 ntBASIC2.8□□□□□ -1.96
RNF4P78317 RNU2-60P-201ENST00000517290 128 ntBASIC2.8□□□□□ -1.96
RNF4P78317 AC022202.1-201ENST00000613515 211 ntBASIC2.8□□□□□ -1.96
RNF4P78317 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.8□□□□□ -1.96
RNF4P78317 ICE2P2-201ENST00000483823 2787 ntBASIC2.8□□□□□ -1.96
RNF4P78317 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
RNF4P78317 VTRNA1-1-201ENST00000363120 99 ntBASIC2.79□□□□□ -1.96
RNF4P78317 Y_RNA.120-201ENST00000363304 110 ntBASIC2.79□□□□□ -1.96
RNF4P78317 RNU6-1325P-201ENST00000364905 105 ntBASIC2.79□□□□□ -1.96
RNF4P78317 RNU6-44P-201ENST00000384045 107 ntBASIC2.79□□□□□ -1.96
RNF4P78317 RNU11-5P-201ENST00000391216 129 ntBASIC2.79□□□□□ -1.96
RNF4P78317 HMGN2P35-201ENST00000412164 270 ntBASIC2.79□□□□□ -1.96
RNF4P78317 AL158823.1-201ENST00000418441 478 ntBASIC2.79□□□□□ -1.96
RNF4P78317 AC092427.1-202ENST00000430569 476 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms