Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC103810.8-201ENST00000607347 118 ntBASIC1.51□□□□□ -2.17
SOX3P41225 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.51□□□□□ -2.17
SOX3P41225 AC127459.3-201ENST00000624328 466 ntBASIC1.51□□□□□ -2.17
SOX3P41225 RNU6-457P-201ENST00000363999 107 ntBASIC1.5□□□□□ -2.17
SOX3P41225 Y_RNA.276-201ENST00000364732 109 ntBASIC1.5□□□□□ -2.17
SOX3P41225 Y_RNA.286-201ENST00000364813 102 ntBASIC1.5□□□□□ -2.17
SOX3P41225 Y_RNA.331-201ENST00000365267 102 ntBASIC1.5□□□□□ -2.17
SOX3P41225 RNU6-505P-201ENST00000384427 107 ntBASIC1.5□□□□□ -2.17
SOX3P41225 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
SOX3P41225 AL606517.2-201ENST00000442855 241 ntBASIC1.5□□□□□ -2.17
SOX3P41225 HSPE1P13-201ENST00000451143 297 ntBASIC1.5□□□□□ -2.17
SOX3P41225 RNU7-94P-201ENST00000459576 63 ntBASIC1.5□□□□□ -2.17
SOX3P41225 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.5□□□□□ -2.17
SOX3P41225 HMGN1P10-201ENST00000474557 553 ntBASIC1.5□□□□□ -2.17
SOX3P41225 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.5□□□□□ -2.17
SOX3P41225 SEPT14P8-201ENST00000508026 178 ntBASIC1.5□□□□□ -2.17
SOX3P41225 RNU7-110P-201ENST00000516891 62 ntBASIC1.5□□□□□ -2.17
SOX3P41225 RPL21P9-201ENST00000556149 474 ntBASIC1.5□□□□□ -2.17
SOX3P41225 MIR4300-201ENST00000581016 96 ntBASIC1.5□□□□□ -2.17
SOX3P41225 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.5□□□□□ -2.17
SOX3P41225 AC008737.2-201ENST00000599446 118 ntBASIC1.5□□□□□ -2.17
SOX3P41225 AC022217.4-201ENST00000604389 163 ntBASIC1.5□□□□□ -2.17
SOX3P41225 SNORD113-5-201ENST00000607261 78 ntBASIC1.5□□□□□ -2.17
SOX3P41225 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
SOX3P41225 AC018630.2-201ENST00000534866 2403 ntBASIC1.49□□□□□ -2.17
SOX3P41225 RNU6-661P-201ENST00000362409 107 ntBASIC1.49□□□□□ -2.17
SOX3P41225 Y_RNA.64-201ENST00000362845 102 ntBASIC1.49□□□□□ -2.17
SOX3P41225 Y_RNA.152-201ENST00000363578 100 ntBASIC1.49□□□□□ -2.17
SOX3P41225 RNU6-324P-201ENST00000363957 106 ntBASIC1.49□□□□□ -2.17
SOX3P41225 Y_RNA.210-201ENST00000364161 110 ntBASIC1.49□□□□□ -2.17
SOX3P41225 Y_RNA.329-201ENST00000365209 107 ntBASIC1.49□□□□□ -2.17
SOX3P41225 RNU6-102P-201ENST00000384485 104 ntBASIC1.49□□□□□ -2.17
SOX3P41225 MIR215-201ENST00000384858 110 ntBASIC1.49□□□□□ -2.17
SOX3P41225 MIR568-201ENST00000385036 95 ntBASIC1.49□□□□□ -2.17
SOX3P41225 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
SOX3P41225 RNA5SP109-201ENST00000391010 116 ntBASIC1.49□□□□□ -2.17
SOX3P41225 RNU11-5P-201ENST00000391216 129 ntBASIC1.49□□□□□ -2.17
SOX3P41225 RNU4-30P-201ENST00000410245 143 ntBASIC1.49□□□□□ -2.17
SOX3P41225 RN7SKP101-201ENST00000411376 320 ntBASIC1.49□□□□□ -2.17
SOX3P41225 RPL21P38-201ENST00000418090 167 ntBASIC1.49□□□□□ -2.17
SOX3P41225 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.49□□□□□ -2.17
SOX3P41225 RNU6-1278P-201ENST00000516130 107 ntBASIC1.49□□□□□ -2.17
SOX3P41225 RNU6-327P-201ENST00000516270 127 ntBASIC1.49□□□□□ -2.17
SOX3P41225 Y_RNA.720-201ENST00000517166 92 ntBASIC1.49□□□□□ -2.17
SOX3P41225 AC073413.2-201ENST00000604332 360 ntBASIC1.49□□□□□ -2.17
SOX3P41225 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
SOX3P41225 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
SOX3P41225 Y_RNA.162-201ENST00000363683 102 ntBASIC1.48□□□□□ -2.17
SOX3P41225 RNU6-770P-201ENST00000363929 105 ntBASIC1.48□□□□□ -2.17
SOX3P41225 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.48□□□□□ -2.17
SOX3P41225 AL358176.2-201ENST00000425769 204 ntBASIC1.48□□□□□ -2.17
SOX3P41225 MTND5P22-201ENST00000458380 195 ntBASIC1.48□□□□□ -2.17
SOX3P41225 RPL36AP21-201ENST00000490372 323 ntBASIC1.48□□□□□ -2.17
SOX3P41225 MRPS35P2-201ENST00000508242 191 ntBASIC1.48□□□□□ -2.17
SOX3P41225 RNA5SP458-201ENST00000516188 119 ntBASIC1.48□□□□□ -2.17
SOX3P41225 RNU6-1337P-201ENST00000516525 95 ntBASIC1.48□□□□□ -2.17
SOX3P41225 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.48□□□□□ -2.17
SOX3P41225 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.48□□□□□ -2.17
SOX3P41225 AC006504.6-201ENST00000590142 199 ntBASIC1.48□□□□□ -2.17
SOX3P41225 AC136443.5-201ENST00000603741 370 ntBASIC1.48□□□□□ -2.17
SOX3P41225 MIR376A1-201ENST00000616574 68 ntBASIC1.48□□□□□ -2.17
SOX3P41225 snoU2_19.2-201ENST00000363024 80 ntBASIC1.47□□□□□ -2.17
SOX3P41225 Y_RNA.133-201ENST00000363428 110 ntBASIC1.47□□□□□ -2.17
SOX3P41225 SNORD113-8-201ENST00000363497 74 ntBASIC1.47□□□□□ -2.17
SOX3P41225 Y_RNA.145-201ENST00000363527 102 ntBASIC1.47□□□□□ -2.17
SOX3P41225 SNORA4.2-201ENST00000365313 147 ntBASIC1.47□□□□□ -2.17
SOX3P41225 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.47□□□□□ -2.17
SOX3P41225 RNU6-21P-201ENST00000384710 107 ntBASIC1.47□□□□□ -2.17
SOX3P41225 RNU6-1105P-201ENST00000384774 107 ntBASIC1.47□□□□□ -2.17
SOX3P41225 SNORA67.5-201ENST00000391036 107 ntBASIC1.47□□□□□ -2.17
SOX3P41225 AC108667.1-201ENST00000428618 249 ntBASIC1.47□□□□□ -2.17
SOX3P41225 LINC01399-202ENST00000458450 244 ntBASIC1.47□□□□□ -2.17
SOX3P41225 Y_RNA.638-201ENST00000459374 113 ntBASIC1.47□□□□□ -2.17
SOX3P41225 RNU6-1143P-201ENST00000516125 104 ntBASIC1.47□□□□□ -2.17
SOX3P41225 SNORA40.15-201ENST00000516884 107 ntBASIC1.47□□□□□ -2.17
SOX3P41225 MIR4303-201ENST00000581299 66 ntBASIC1.47□□□□□ -2.17
SOX3P41225 AC091178.2-201ENST00000584401 117 ntBASIC1.47□□□□□ -2.17
SOX3P41225 AP000942.3-201ENST00000603702 160 ntBASIC1.47□□□□□ -2.17
SOX3P41225 MIR6079-201ENST00000635807 62 ntBASIC1.47□□□□□ -2.17
SOX3P41225 Y_RNA.19-201ENST00000362462 99 ntBASIC1.46□□□□□ -2.18
SOX3P41225 RNU6-950P-201ENST00000384651 107 ntBASIC1.46□□□□□ -2.18
SOX3P41225 RNU6-376P-201ENST00000384731 106 ntBASIC1.46□□□□□ -2.18
SOX3P41225 RNU6-1109P-201ENST00000391187 107 ntBASIC1.46□□□□□ -2.18
SOX3P41225 RNU6-710P-201ENST00000410424 105 ntBASIC1.46□□□□□ -2.18
SOX3P41225 RNA5SP511-201ENST00000410487 115 ntBASIC1.46□□□□□ -2.18
SOX3P41225 FTH1P12-201ENST00000432137 551 ntBASIC1.46□□□□□ -2.18
SOX3P41225 HSPE1P25-201ENST00000455484 251 ntBASIC1.46□□□□□ -2.18
SOX3P41225 snoU13.27-201ENST00000459278 104 ntBASIC1.46□□□□□ -2.18
SOX3P41225 AC025465.3-201ENST00000510570 311 ntBASIC1.46□□□□□ -2.18
SOX3P41225 RNU6-496P-201ENST00000516145 99 ntBASIC1.46□□□□□ -2.18
SOX3P41225 SNORA31.10-201ENST00000516482 106 ntBASIC1.46□□□□□ -2.18
SOX3P41225 RNU6-63P-201ENST00000516690 95 ntBASIC1.46□□□□□ -2.18
SOX3P41225 SNORD53B-201ENST00000577887 78 ntBASIC1.46□□□□□ -2.18
SOX3P41225 MIR8054-201ENST00000620877 86 ntBASIC1.46□□□□□ -2.18
SOX3P41225 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.46□□□□□ -2.18
SOX3P41225 Y_RNA.172-201ENST00000363765 102 ntBASIC1.45□□□□□ -2.18
SOX3P41225 Y_RNA.383-201ENST00000383855 97 ntBASIC1.45□□□□□ -2.18
SOX3P41225 RNU6-439P-201ENST00000384188 106 ntBASIC1.45□□□□□ -2.18
SOX3P41225 MIR562-201ENST00000384894 95 ntBASIC1.45□□□□□ -2.18
SOX3P41225 RNU6-440P-201ENST00000390882 105 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms