Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SNORD116-28-201ENST00000516123 91 ntBASIC0.92□□□□□ -2.26
SHMT2P34897 RNU6-113P-201ENST00000516653 101 ntBASIC0.92□□□□□ -2.26
SHMT2P34897 RNU6-63P-201ENST00000516690 95 ntBASIC0.92□□□□□ -2.26
SHMT2P34897 AC023442.1-201ENST00000531247 422 ntBASIC0.92□□□□□ -2.26
SHMT2P34897 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.92□□□□□ -2.26
SHMT2P34897 AL117336.2-201ENST00000602435 335 ntBASIC0.92□□□□□ -2.26
SHMT2P34897 RNU1-124P-201ENST00000363861 145 ntBASIC0.91□□□□□ -2.26
SHMT2P34897 MIR532-201ENST00000385025 91 ntBASIC0.91□□□□□ -2.26
SHMT2P34897 MIR625-201ENST00000385047 85 ntBASIC0.91□□□□□ -2.26
SHMT2P34897 RNU6-1156P-201ENST00000410365 100 ntBASIC0.91□□□□□ -2.26
SHMT2P34897 AC048334.1-201ENST00000477975 159 ntBASIC0.91□□□□□ -2.26
SHMT2P34897 AL358944.1-201ENST00000528537 144 ntBASIC0.91□□□□□ -2.26
SHMT2P34897 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC0.91□□□□□ -2.26
SHMT2P34897 MIR6857-201ENST00000613267 93 ntBASIC0.91□□□□□ -2.26
SHMT2P34897 MIR96-201ENST00000362288 78 ntBASIC0.9□□□□□ -2.27
SHMT2P34897 RNU4-41P-201ENST00000364426 143 ntBASIC0.9□□□□□ -2.27
SHMT2P34897 SNORA2.2-201ENST00000365473 135 ntBASIC0.9□□□□□ -2.27
SHMT2P34897 RNU6-1310P-201ENST00000384153 107 ntBASIC0.9□□□□□ -2.27
SHMT2P34897 MIR499A-201ENST00000384903 122 ntBASIC0.9□□□□□ -2.27
SHMT2P34897 AL451046.2-201ENST00000403074 277 ntBASIC0.9□□□□□ -2.27
SHMT2P34897 RNU6-1054P-201ENST00000411293 104 ntBASIC0.9□□□□□ -2.27
SHMT2P34897 RNU6-1304P-201ENST00000411374 106 ntBASIC0.9□□□□□ -2.27
SHMT2P34897 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.9□□□□□ -2.27
SHMT2P34897 Z98949.2-201ENST00000440996 144 ntBASIC0.9□□□□□ -2.27
SHMT2P34897 ELOCP24-201ENST00000456370 334 ntBASIC0.9□□□□□ -2.27
SHMT2P34897 RPL39P28-201ENST00000465655 155 ntBASIC0.9□□□□□ -2.27
SHMT2P34897 AL049830.1-201ENST00000468034 425 ntBASIC0.9□□□□□ -2.27
SHMT2P34897 UBL5P1-201ENST00000507979 193 ntBASIC0.9□□□□□ -2.27
SHMT2P34897 RNU7-12P-201ENST00000516030 62 ntBASIC0.9□□□□□ -2.27
SHMT2P34897 AC004467.1-201ENST00000615678 330 ntBASIC0.9□□□□□ -2.27
SHMT2P34897 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.9□□□□□ -2.27
SHMT2P34897 RNU4-79P-201ENST00000362764 141 ntBASIC0.89□□□□□ -2.27
SHMT2P34897 RNU6-926P-201ENST00000384075 107 ntBASIC0.89□□□□□ -2.27
SHMT2P34897 RNY3P4-201ENST00000384428 101 ntBASIC0.89□□□□□ -2.27
SHMT2P34897 MIR526A1-201ENST00000384897 85 ntBASIC0.89□□□□□ -2.27
SHMT2P34897 AL354751.2-201ENST00000415471 210 ntBASIC0.89□□□□□ -2.27
SHMT2P34897 MRPS18CP6-201ENST00000423587 223 ntBASIC0.89□□□□□ -2.27
SHMT2P34897 AC245047.7-201ENST00000440265 293 ntBASIC0.89□□□□□ -2.27
SHMT2P34897 AC233266.1-201ENST00000454518 96 ntBASIC0.89□□□□□ -2.27
SHMT2P34897 MTCO3P10-201ENST00000455912 772 ntBASIC0.89□□□□□ -2.27
SHMT2P34897 SNORA31.4-201ENST00000516049 129 ntBASIC0.89□□□□□ -2.27
SHMT2P34897 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.89□□□□□ -2.27
SHMT2P34897 AC136443.5-201ENST00000603741 370 ntBASIC0.89□□□□□ -2.27
SHMT2P34897 AC242852.1-201ENST00000612151 96 ntBASIC0.89□□□□□ -2.27
SHMT2P34897 AC244015.1-201ENST00000622301 99 ntBASIC0.89□□□□□ -2.27
SHMT2P34897 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
SHMT2P34897 Y_RNA.101-201ENST00000363154 102 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 RNY3P11-201ENST00000364153 102 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 RNU1-93P-201ENST00000364704 169 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 RNU6-136P-201ENST00000384663 107 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 RNU6-910P-201ENST00000390844 107 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 AL031003.1-201ENST00000404229 172 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 RNA5SP511-201ENST00000410487 115 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.88□□□□□ -2.27
SHMT2P34897 AL162725.1-201ENST00000435405 301 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 AC104332.1-201ENST00000440471 797 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 RPS4XP11-201ENST00000446897 772 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 FCF1P4-201ENST00000448326 183 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 HSPE1P13-201ENST00000451143 297 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 RPL30P15-201ENST00000457129 321 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 RNU6-470P-201ENST00000515954 104 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 RNU6-322P-201ENST00000516010 103 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 RNU6-1337P-201ENST00000516525 95 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 SNORA20.3-201ENST00000516880 132 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 RNU7-4P-201ENST00000516961 62 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 RNU6-264P-201ENST00000517134 104 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 SNORA70.22-201ENST00000517160 124 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 RNU6-1116P-201ENST00000517269 99 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 MIR5690-201ENST00000583739 73 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 AC113139.1-201ENST00000605049 239 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 AC240442.1-201ENST00000616055 283 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 MIR6767-201ENST00000637302 66 ntBASIC0.88□□□□□ -2.27
SHMT2P34897 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.88□□□□□ -2.27
SHMT2P34897 Y_RNA.191-201ENST00000363972 113 ntBASIC0.87□□□□□ -2.27
SHMT2P34897 Y_RNA.238-201ENST00000364441 102 ntBASIC0.87□□□□□ -2.27
SHMT2P34897 Y_RNA.363-201ENST00000365529 113 ntBASIC0.87□□□□□ -2.27
SHMT2P34897 MIR19B1-201ENST00000384829 87 ntBASIC0.87□□□□□ -2.27
SHMT2P34897 RNU2-54P-201ENST00000410299 190 ntBASIC0.87□□□□□ -2.27
SHMT2P34897 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.87□□□□□ -2.27
SHMT2P34897 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.87□□□□□ -2.27
SHMT2P34897 RBMX2P4-201ENST00000441256 376 ntBASIC0.87□□□□□ -2.27
SHMT2P34897 RNU6-559P-201ENST00000516151 98 ntBASIC0.87□□□□□ -2.27
SHMT2P34897 AC136932.1-201ENST00000574771 208 ntBASIC0.87□□□□□ -2.27
SHMT2P34897 AL357312.1-201ENST00000603879 298 ntBASIC0.87□□□□□ -2.27
SHMT2P34897 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.87□□□□□ -2.27
SHMT2P34897 RNU6-833P-201ENST00000363486 107 ntBASIC0.86□□□□□ -2.27
SHMT2P34897 SNORD116-13-201ENST00000384408 92 ntBASIC0.86□□□□□ -2.27
SHMT2P34897 MIR559-201ENST00000385188 96 ntBASIC0.86□□□□□ -2.27
SHMT2P34897 SNORD78.2-201ENST00000391076 69 ntBASIC0.86□□□□□ -2.27
SHMT2P34897 RNU2-61P-201ENST00000411069 191 ntBASIC0.86□□□□□ -2.27
SHMT2P34897 RNU6-1199P-201ENST00000411249 104 ntBASIC0.86□□□□□ -2.27
SHMT2P34897 AC098614.3-201ENST00000438957 440 ntBASIC0.86□□□□□ -2.27
SHMT2P34897 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.86□□□□□ -2.27
SHMT2P34897 Y_RNA.653-201ENST00000459091 95 ntBASIC0.86□□□□□ -2.27
SHMT2P34897 RNU7-169P-201ENST00000459456 61 ntBASIC0.86□□□□□ -2.27
SHMT2P34897 SNORD79.1-201ENST00000516069 84 ntBASIC0.86□□□□□ -2.27
SHMT2P34897 SNORA70.12-201ENST00000516084 153 ntBASIC0.86□□□□□ -2.27
SHMT2P34897 RNU6-966P-201ENST00000516479 104 ntBASIC0.86□□□□□ -2.27
SHMT2P34897 RNU6-1012P-201ENST00000516606 109 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms