Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.86□□□□□ -2.11
SHMT1P34896 AC024614.2-201ENST00000577584 372 ntBASIC1.86□□□□□ -2.11
SHMT1P34896 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.86□□□□□ -2.11
SHMT1P34896 AC136443.5-201ENST00000603741 370 ntBASIC1.86□□□□□ -2.11
SHMT1P34896 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.86□□□□□ -2.11
SHMT1P34896 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
SHMT1P34896 Y_RNA.4-201ENST00000362333 112 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 RNU4-90P-201ENST00000362773 141 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 SNORD81.1-201ENST00000363064 77 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 RNU1-22P-201ENST00000363334 158 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 RNU6-112P-201ENST00000363599 104 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 SNORA33-201ENST00000363664 130 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 Y_RNA.329-201ENST00000365209 107 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 RNU6-505P-201ENST00000384427 107 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 MIR520A-201ENST00000384862 85 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 RNU6-710P-201ENST00000410424 105 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 RNU6-121P-201ENST00000410525 99 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 Y_RNA.602-201ENST00000410535 92 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 RNA5SP100-201ENST00000410903 110 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 RNA5SP59-201ENST00000410922 110 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 MTND2P23-201ENST00000422990 651 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 AC245047.4-201ENST00000433189 144 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 HSPE1P13-201ENST00000451143 297 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 AL163195.1-201ENST00000496941 348 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.85□□□□□ -2.11
SHMT1P34896 AC108729.3-201ENST00000513484 108 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 RPL21P9-201ENST00000556149 474 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 AC127459.3-201ENST00000624328 466 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 U6.108-201ENST00000637764 58 ntBASIC1.85□□□□□ -2.11
SHMT1P34896 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
SHMT1P34896 Y_RNA.105-201ENST00000363182 111 ntBASIC1.84□□□□□ -2.11
SHMT1P34896 Y_RNA.124-201ENST00000363339 93 ntBASIC1.84□□□□□ -2.11
SHMT1P34896 RNU4-13P-201ENST00000364019 141 ntBASIC1.84□□□□□ -2.11
SHMT1P34896 Y_RNA.222-201ENST00000364264 102 ntBASIC1.84□□□□□ -2.11
SHMT1P34896 Y_RNA.581-201ENST00000391017 97 ntBASIC1.84□□□□□ -2.11
SHMT1P34896 RNU2-61P-201ENST00000411069 191 ntBASIC1.84□□□□□ -2.11
SHMT1P34896 AC244636.1-201ENST00000421152 228 ntBASIC1.84□□□□□ -2.11
SHMT1P34896 POLR2KP2-201ENST00000438155 177 ntBASIC1.84□□□□□ -2.11
SHMT1P34896 RPL23AP6-201ENST00000446637 472 ntBASIC1.84□□□□□ -2.11
SHMT1P34896 RNU7-94P-201ENST00000459576 63 ntBASIC1.84□□□□□ -2.11
SHMT1P34896 RPS26P45-201ENST00000471748 340 ntBASIC1.84□□□□□ -2.11
SHMT1P34896 RNU6-1278P-201ENST00000516130 107 ntBASIC1.84□□□□□ -2.11
SHMT1P34896 RNU6-496P-201ENST00000516145 99 ntBASIC1.84□□□□□ -2.11
SHMT1P34896 RNU6-635P-201ENST00000516651 102 ntBASIC1.84□□□□□ -2.11
SHMT1P34896 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.84□□□□□ -2.11
SHMT1P34896 AP003733.2-201ENST00000529409 171 ntBASIC1.84□□□□□ -2.11
SHMT1P34896 Y_RNA.64-201ENST00000362845 102 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 Y_RNA.286-201ENST00000364813 102 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 RNU6-806P-201ENST00000365147 105 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 Y_RNA.383-201ENST00000383855 97 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 RNU6-713P-201ENST00000384761 107 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 RNU2-7P-201ENST00000410794 178 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 AC009310.1-201ENST00000414414 451 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.83□□□□□ -2.12
SHMT1P34896 RPL31P63-201ENST00000422565 375 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 DYNLT3P2-201ENST00000442517 295 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 AL118496.2-201ENST00000448300 230 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 MTATP8P1-201ENST00000467115 207 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 AC010409.1-201ENST00000487382 476 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 RNU6-1053P-201ENST00000515930 101 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 RNU7-128P-201ENST00000517247 62 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.83□□□□□ -2.12
SHMT1P34896 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.83□□□□□ -2.12
SHMT1P34896 AL117187.1-201ENST00000555482 181 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 SNORD53B-201ENST00000577887 78 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 MIR4299-201ENST00000577899 72 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 AC010900.2-201ENST00000604508 210 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 BX248123.2-201ENST00000606318 124 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.83□□□□□ -2.12
SHMT1P34896 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.83□□□□□ -2.12
SHMT1P34896 Y_RNA.176-201ENST00000363815 109 ntBASIC1.82□□□□□ -2.12
SHMT1P34896 SNORA63D-201ENST00000364359 132 ntBASIC1.82□□□□□ -2.12
SHMT1P34896 RNU6-296P-201ENST00000384608 107 ntBASIC1.82□□□□□ -2.12
SHMT1P34896 RNU6-1248P-201ENST00000391096 64 ntBASIC1.82□□□□□ -2.12
SHMT1P34896 MIR548F4-201ENST00000408515 105 ntBASIC1.82□□□□□ -2.12
SHMT1P34896 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.82□□□□□ -2.12
SHMT1P34896 HSPE1P25-201ENST00000455484 251 ntBASIC1.82□□□□□ -2.12
SHMT1P34896 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.82□□□□□ -2.12
SHMT1P34896 AC098869.1-201ENST00000481627 292 ntBASIC1.82□□□□□ -2.12
SHMT1P34896 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.82□□□□□ -2.12
SHMT1P34896 AC008269.2-201ENST00000561915 1105 ntBASIC1.82□□□□□ -2.12
SHMT1P34896 AC015720.1-201ENST00000565251 277 ntBASIC1.82□□□□□ -2.12
SHMT1P34896 AC073413.2-201ENST00000604332 360 ntBASIC1.82□□□□□ -2.12
SHMT1P34896 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
SHMT1P34896 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.82□□□□□ -2.12
SHMT1P34896 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
SHMT1P34896 Y_RNA.26-201ENST00000362539 101 ntBASIC1.81□□□□□ -2.12
SHMT1P34896 snoU2_19.2-201ENST00000363024 80 ntBASIC1.81□□□□□ -2.12
SHMT1P34896 RNU6-117P-201ENST00000365415 107 ntBASIC1.81□□□□□ -2.12
SHMT1P34896 RNU6-376P-201ENST00000384731 106 ntBASIC1.81□□□□□ -2.12
SHMT1P34896 MIR562-201ENST00000384894 95 ntBASIC1.81□□□□□ -2.12
SHMT1P34896 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
SHMT1P34896 RPL21P38-201ENST00000418090 167 ntBASIC1.81□□□□□ -2.12
SHMT1P34896 AL358176.2-201ENST00000425769 204 ntBASIC1.81□□□□□ -2.12
SHMT1P34896 RNU6-1337P-201ENST00000516525 95 ntBASIC1.81□□□□□ -2.12
SHMT1P34896 RNA5SP481-201ENST00000516814 122 ntBASIC1.81□□□□□ -2.12
SHMT1P34896 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms