Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RN7SL504P-201ENST00000494496 287 ntBASIC3.24□□□□□ -1.89
COL8A1P27658 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.24□□□□□ -1.89
COL8A1P27658 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.24□□□□□ -1.89
COL8A1P27658 MIR4325-201ENST00000583049 90 ntBASIC3.24□□□□□ -1.89
COL8A1P27658 ELOCP29-201ENST00000588193 334 ntBASIC3.24□□□□□ -1.89
COL8A1P27658 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC3.24□□□□□ -1.89
COL8A1P27658 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.24□□□□□ -1.89
COL8A1P27658 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
COL8A1P27658 MAPK10-253ENST00000641010 4072 ntBASIC3.24□□□□□ -1.89
COL8A1P27658 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL8A1P27658 AL049781.1-201ENST00000623195 3585 ntBASIC3.23□□□□□ -1.89
COL8A1P27658 UBE3AP2-201ENST00000429033 2259 ntBASIC3.23□□□□□ -1.89
COL8A1P27658 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL8A1P27658 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.23□□□□□ -1.89
COL8A1P27658 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL8A1P27658 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.23□□□□□ -1.89
COL8A1P27658 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
COL8A1P27658 RNU4-35P-201ENST00000362588 141 ntBASIC3.23□□□□□ -1.89
COL8A1P27658 RNA5SP189-201ENST00000364920 115 ntBASIC3.23□□□□□ -1.89
COL8A1P27658 AL627390.1-201ENST00000396055 340 ntBASIC3.23□□□□□ -1.89
COL8A1P27658 SNORA3C-201ENST00000408792 125 ntBASIC3.23□□□□□ -1.89
COL8A1P27658 CYCSP4-201ENST00000429682 331 ntBASIC3.23□□□□□ -1.89
COL8A1P27658 AL035398.1-201ENST00000430869 322 ntBASIC3.23□□□□□ -1.89
COL8A1P27658 RNU7-99P-201ENST00000516271 62 ntBASIC3.23□□□□□ -1.89
COL8A1P27658 U2.20-201ENST00000613956 192 ntBASIC3.23□□□□□ -1.89
COL8A1P27658 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL8A1P27658 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
COL8A1P27658 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
COL8A1P27658 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.22□□□□□ -1.89
COL8A1P27658 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL8A1P27658 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
COL8A1P27658 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.22□□□□□ -1.89
COL8A1P27658 SNORD14E-201ENST00000364009 85 ntBASIC3.22□□□□□ -1.89
COL8A1P27658 AL138878.1-201ENST00000405131 347 ntBASIC3.22□□□□□ -1.89
COL8A1P27658 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.22□□□□□ -1.89
COL8A1P27658 PHBP14-201ENST00000512887 367 ntBASIC3.22□□□□□ -1.89
COL8A1P27658 MIR2114-201ENST00000516645 80 ntBASIC3.22□□□□□ -1.89
COL8A1P27658 RNU6-341P-201ENST00000516973 96 ntBASIC3.22□□□□□ -1.89
COL8A1P27658 AC002984.1-201ENST00000591692 448 ntBASIC3.22□□□□□ -1.89
COL8A1P27658 AC020914.4-201ENST00000597690 277 ntBASIC3.22□□□□□ -1.89
COL8A1P27658 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.22□□□□□ -1.89
COL8A1P27658 U7.4-201ENST00000614961 63 ntBASIC3.22□□□□□ -1.89
COL8A1P27658 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
COL8A1P27658 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.22□□□□□ -1.89
COL8A1P27658 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.22□□□□□ -1.89
COL8A1P27658 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
COL8A1P27658 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
COL8A1P27658 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.21□□□□□ -1.9
COL8A1P27658 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.21□□□□□ -1.9
COL8A1P27658 RNU6-268P-201ENST00000364174 107 ntBASIC3.21□□□□□ -1.9
COL8A1P27658 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
COL8A1P27658 RNU6-1186P-201ENST00000410429 97 ntBASIC3.21□□□□□ -1.9
COL8A1P27658 SNRPGP14-201ENST00000435400 219 ntBASIC3.21□□□□□ -1.9
COL8A1P27658 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.21□□□□□ -1.9
COL8A1P27658 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.21□□□□□ -1.9
COL8A1P27658 RAC1P2-201ENST00000511164 579 ntBASIC3.21□□□□□ -1.9
COL8A1P27658 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.21□□□□□ -1.9
COL8A1P27658 RNA5SP341-201ENST00000516261 117 ntBASIC3.21□□□□□ -1.9
COL8A1P27658 MIR3690-201ENST00000580266 75 ntBASIC3.21□□□□□ -1.9
COL8A1P27658 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.21□□□□□ -1.9
COL8A1P27658 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
COL8A1P27658 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.21□□□□□ -1.9
COL8A1P27658 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.21□□□□□ -1.9
COL8A1P27658 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.21□□□□□ -1.9
COL8A1P27658 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.21□□□□□ -1.9
COL8A1P27658 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
COL8A1P27658 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL8A1P27658 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.2□□□□□ -1.9
COL8A1P27658 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.2□□□□□ -1.9
COL8A1P27658 MIR449A-201ENST00000362113 91 ntBASIC3.2□□□□□ -1.9
COL8A1P27658 RNU6-1313P-201ENST00000362622 102 ntBASIC3.2□□□□□ -1.9
COL8A1P27658 SNORA5B-201ENST00000363786 132 ntBASIC3.2□□□□□ -1.9
COL8A1P27658 SNORD6-201ENST00000365444 73 ntBASIC3.2□□□□□ -1.9
COL8A1P27658 RNU6-1274P-201ENST00000384557 107 ntBASIC3.2□□□□□ -1.9
COL8A1P27658 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
COL8A1P27658 AC009414.1-201ENST00000427200 443 ntBASIC3.2□□□□□ -1.9
COL8A1P27658 S100A11P2-201ENST00000467589 312 ntBASIC3.2□□□□□ -1.9
COL8A1P27658 RNA5SP164-201ENST00000516533 110 ntBASIC3.2□□□□□ -1.9
COL8A1P27658 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.2□□□□□ -1.9
COL8A1P27658 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.2□□□□□ -1.9
COL8A1P27658 AL360157.1-201ENST00000565962 87 ntBASIC3.2□□□□□ -1.9
COL8A1P27658 AC012531.5-201ENST00000611375 151 ntBASIC3.2□□□□□ -1.9
COL8A1P27658 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL8A1P27658 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.2□□□□□ -1.9
COL8A1P27658 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL8A1P27658 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL8A1P27658 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
COL8A1P27658 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
COL8A1P27658 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL8A1P27658 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL8A1P27658 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL8A1P27658 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.19□□□□□ -1.9
COL8A1P27658 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL8A1P27658 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.19□□□□□ -1.9
COL8A1P27658 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL8A1P27658 SNORA31-201ENST00000362607 130 ntBASIC3.19□□□□□ -1.9
COL8A1P27658 SNORA1.1-201ENST00000364671 133 ntBASIC3.19□□□□□ -1.9
COL8A1P27658 Y_RNA.267-201ENST00000364679 109 ntBASIC3.19□□□□□ -1.9
COL8A1P27658 RNU1-89P-201ENST00000384592 164 ntBASIC3.19□□□□□ -1.9
COL8A1P27658 SNORD77B-201ENST00000391112 67 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms