Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RNU1-142P-201ENST00000516682 145 ntBASIC3.45□□□□□ -1.86
USP3Q9Y6I4 AP002004.2-201ENST00000531656 154 ntBASIC3.45□□□□□ -1.86
USP3Q9Y6I4 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.45□□□□□ -1.86
USP3Q9Y6I4 uc_338.1-201ENST00000612113 180 ntBASIC3.45□□□□□ -1.86
USP3Q9Y6I4 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
USP3Q9Y6I4 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.45□□□□□ -1.86
USP3Q9Y6I4 AC073346.2-201ENST00000624724 2058 ntBASIC3.45□□□□□ -1.86
USP3Q9Y6I4 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
USP3Q9Y6I4 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.44□□□□□ -1.86
USP3Q9Y6I4 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
USP3Q9Y6I4 MIR126-201ENST00000362291 85 ntBASIC3.44□□□□□ -1.86
USP3Q9Y6I4 RNA5SP387-201ENST00000364226 106 ntBASIC3.44□□□□□ -1.86
USP3Q9Y6I4 MIR548A2-201ENST00000384956 97 ntBASIC3.44□□□□□ -1.86
USP3Q9Y6I4 FTH1P12-201ENST00000432137 551 ntBASIC3.44□□□□□ -1.86
USP3Q9Y6I4 BX510359.1-201ENST00000456973 237 ntBASIC3.44□□□□□ -1.86
USP3Q9Y6I4 Y_RNA.666-201ENST00000516187 112 ntBASIC3.44□□□□□ -1.86
USP3Q9Y6I4 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
USP3Q9Y6I4 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
USP3Q9Y6I4 RNU1-23P-201ENST00000363361 144 ntBASIC3.43□□□□□ -1.86
USP3Q9Y6I4 Y_RNA.328-201ENST00000365208 113 ntBASIC3.43□□□□□ -1.86
USP3Q9Y6I4 MIR591-201ENST00000385290 95 ntBASIC3.43□□□□□ -1.86
USP3Q9Y6I4 SRIP3-201ENST00000413200 219 ntBASIC3.43□□□□□ -1.86
USP3Q9Y6I4 RN7SL636P-201ENST00000497504 294 ntBASIC3.43□□□□□ -1.86
USP3Q9Y6I4 SCGB1D5P-201ENST00000515134 247 ntBASIC3.43□□□□□ -1.86
USP3Q9Y6I4 RNU6-1291P-201ENST00000516591 104 ntBASIC3.43□□□□□ -1.86
USP3Q9Y6I4 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.43□□□□□ -1.86
USP3Q9Y6I4 SCARNA20.6-201ENST00000517251 106 ntBASIC3.43□□□□□ -1.86
USP3Q9Y6I4 AC024995.1-201ENST00000523014 93 ntBASIC3.43□□□□□ -1.86
USP3Q9Y6I4 AC091544.4-201ENST00000555268 342 ntBASIC3.43□□□□□ -1.86
USP3Q9Y6I4 MIR5680-201ENST00000577577 84 ntBASIC3.43□□□□□ -1.86
USP3Q9Y6I4 RNU6-94P-201ENST00000607728 107 ntBASIC3.43□□□□□ -1.86
USP3Q9Y6I4 AC134878.1-201ENST00000619901 243 ntBASIC3.43□□□□□ -1.86
USP3Q9Y6I4 AC009831.4-201ENST00000620744 325 ntBASIC3.43□□□□□ -1.86
USP3Q9Y6I4 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
USP3Q9Y6I4 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.42□□□□□ -1.86
USP3Q9Y6I4 AL589743.1-201ENST00000551932 2712 ntBASIC3.42□□□□□ -1.86
USP3Q9Y6I4 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.42□□□□□ -1.86
USP3Q9Y6I4 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.42□□□□□ -1.86
USP3Q9Y6I4 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.42□□□□□ -1.86
USP3Q9Y6I4 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
USP3Q9Y6I4 RNY4P6-201ENST00000363667 96 ntBASIC3.42□□□□□ -1.86
USP3Q9Y6I4 Y_RNA.198-201ENST00000364013 98 ntBASIC3.42□□□□□ -1.86
USP3Q9Y6I4 RNU6-756P-201ENST00000383997 107 ntBASIC3.42□□□□□ -1.86
USP3Q9Y6I4 MIR518F-201ENST00000384973 87 ntBASIC3.42□□□□□ -1.86
USP3Q9Y6I4 RNU2-48P-201ENST00000410694 191 ntBASIC3.42□□□□□ -1.86
USP3Q9Y6I4 RNU4-47P-201ENST00000410876 114 ntBASIC3.42□□□□□ -1.86
USP3Q9Y6I4 RNU1-131P-201ENST00000458943 161 ntBASIC3.42□□□□□ -1.86
USP3Q9Y6I4 RN7SL330P-201ENST00000469709 307 ntBASIC3.42□□□□□ -1.86
USP3Q9Y6I4 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.42□□□□□ -1.86
USP3Q9Y6I4 AC023141.11-201ENST00000508864 202 ntBASIC3.42□□□□□ -1.86
USP3Q9Y6I4 MIR2682-201ENST00000580305 110 ntBASIC3.42□□□□□ -1.86
USP3Q9Y6I4 MIR5195-201ENST00000583555 115 ntBASIC3.42□□□□□ -1.86
USP3Q9Y6I4 MIR3651-201ENST00000630427 90 ntBASIC3.42□□□□□ -1.86
USP3Q9Y6I4 MIR338-201ENST00000636369 67 ntBASIC3.42□□□□□ -1.86
USP3Q9Y6I4 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
USP3Q9Y6I4 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
USP3Q9Y6I4 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.41□□□□□ -1.86
USP3Q9Y6I4 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
USP3Q9Y6I4 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.41□□□□□ -1.86
USP3Q9Y6I4 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.41□□□□□ -1.86
USP3Q9Y6I4 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.41□□□□□ -1.86
USP3Q9Y6I4 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
USP3Q9Y6I4 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
USP3Q9Y6I4 Y_RNA.213-201ENST00000364178 111 ntBASIC3.41□□□□□ -1.86
USP3Q9Y6I4 Y_RNA.323-201ENST00000365157 109 ntBASIC3.41□□□□□ -1.86
USP3Q9Y6I4 Y_RNA.333-201ENST00000365274 102 ntBASIC3.41□□□□□ -1.86
USP3Q9Y6I4 Y_RNA.366-201ENST00000365540 102 ntBASIC3.41□□□□□ -1.86
USP3Q9Y6I4 SNORA9-201ENST00000384215 133 ntBASIC3.41□□□□□ -1.86
USP3Q9Y6I4 MIR759-201ENST00000390224 91 ntBASIC3.41□□□□□ -1.86
USP3Q9Y6I4 RNU1-101P-201ENST00000391171 127 ntBASIC3.41□□□□□ -1.86
USP3Q9Y6I4 RNY4P30-201ENST00000410216 95 ntBASIC3.41□□□□□ -1.86
USP3Q9Y6I4 EDDM3CP-201ENST00000415977 425 ntBASIC3.41□□□□□ -1.86
USP3Q9Y6I4 AC099677.2-201ENST00000436385 175 ntBASIC3.41□□□□□ -1.86
USP3Q9Y6I4 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC3.41□□□□□ -1.86
USP3Q9Y6I4 MIR5004-201ENST00000579078 107 ntBASIC3.41□□□□□ -1.86
USP3Q9Y6I4 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.41□□□□□ -1.86
USP3Q9Y6I4 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
USP3Q9Y6I4 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
USP3Q9Y6I4 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.41□□□□□ -1.86
USP3Q9Y6I4 Y_RNA.99-201ENST00000363138 105 ntBASIC3.4□□□□□ -1.87
USP3Q9Y6I4 Y_RNA.267-201ENST00000364679 109 ntBASIC3.4□□□□□ -1.87
USP3Q9Y6I4 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
USP3Q9Y6I4 CD24P4-201ENST00000382840 243 ntBASIC3.4□□□□□ -1.87
USP3Q9Y6I4 RNU6-442P-201ENST00000383968 104 ntBASIC3.4□□□□□ -1.87
USP3Q9Y6I4 MIR522-201ENST00000385071 87 ntBASIC3.4□□□□□ -1.87
USP3Q9Y6I4 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.4□□□□□ -1.87
USP3Q9Y6I4 AC006539.3-201ENST00000454258 129 ntBASIC3.4□□□□□ -1.87
USP3Q9Y6I4 AC104027.1-201ENST00000521887 300 ntBASIC3.4□□□□□ -1.87
USP3Q9Y6I4 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.4□□□□□ -1.87
USP3Q9Y6I4 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.4□□□□□ -1.87
USP3Q9Y6I4 AC022217.4-201ENST00000604389 163 ntBASIC3.4□□□□□ -1.87
USP3Q9Y6I4 AL355297.2-201ENST00000604792 129 ntBASIC3.4□□□□□ -1.87
USP3Q9Y6I4 AC006441.5-201ENST00000612680 209 ntBASIC3.4□□□□□ -1.87
USP3Q9Y6I4 AL591926.4-201ENST00000616895 298 ntBASIC3.4□□□□□ -1.87
USP3Q9Y6I4 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
USP3Q9Y6I4 AC091152.2-201ENST00000591628 2569 ntBASIC3.4□□□□□ -1.87
USP3Q9Y6I4 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
USP3Q9Y6I4 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.39□□□□□ -1.87
USP3Q9Y6I4 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
USP3Q9Y6I4 SNORA51.5-201ENST00000384126 131 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms