Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 FTX_2.1-201ENST00000618816 94 ntBASIC2.58□□□□□ -2
NR2E3Q9Y5X4 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.57□□□□□ -2
NR2E3Q9Y5X4 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.57□□□□□ -2
NR2E3Q9Y5X4 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
NR2E3Q9Y5X4 AC068700.1-201ENST00000565862 3754 ntBASIC2.57□□□□□ -2
NR2E3Q9Y5X4 MIR340-201ENST00000362125 95 ntBASIC2.57□□□□□ -2
NR2E3Q9Y5X4 MIR411-201ENST00000362239 96 ntBASIC2.57□□□□□ -2
NR2E3Q9Y5X4 SNORA25.9-201ENST00000365087 128 ntBASIC2.57□□□□□ -2
NR2E3Q9Y5X4 PCNPP3-201ENST00000393579 471 ntBASIC2.57□□□□□ -2
NR2E3Q9Y5X4 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.57□□□□□ -2
NR2E3Q9Y5X4 AC008134.1-201ENST00000420943 193 ntBASIC2.57□□□□□ -2
NR2E3Q9Y5X4 AC108667.1-201ENST00000428618 249 ntBASIC2.57□□□□□ -2
NR2E3Q9Y5X4 AC011753.1-201ENST00000451001 220 ntBASIC2.57□□□□□ -2
NR2E3Q9Y5X4 snoU13.18-201ENST00000459483 104 ntBASIC2.57□□□□□ -2
NR2E3Q9Y5X4 RNU6-856P-201ENST00000516959 98 ntBASIC2.57□□□□□ -2
NR2E3Q9Y5X4 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.57□□□□□ -2
NR2E3Q9Y5X4 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.57□□□□□ -2
NR2E3Q9Y5X4 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.57□□□□□ -2
NR2E3Q9Y5X4 AC037487.3-201ENST00000606668 112 ntBASIC2.57□□□□□ -2
NR2E3Q9Y5X4 AL137847.3-201ENST00000611521 109 ntBASIC2.57□□□□□ -2
NR2E3Q9Y5X4 U6.115-201ENST00000636045 103 ntBASIC2.57□□□□□ -2
NR2E3Q9Y5X4 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.57□□□□□ -2
NR2E3Q9Y5X4 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.56□□□□□ -2
NR2E3Q9Y5X4 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.56□□□□□ -2
NR2E3Q9Y5X4 Y_RNA.29-201ENST00000362570 113 ntBASIC2.56□□□□□ -2
NR2E3Q9Y5X4 Y_RNA.83-201ENST00000363005 113 ntBASIC2.56□□□□□ -2
NR2E3Q9Y5X4 RNY1P10-201ENST00000363268 113 ntBASIC2.56□□□□□ -2
NR2E3Q9Y5X4 Y_RNA.199-201ENST00000364014 102 ntBASIC2.56□□□□□ -2
NR2E3Q9Y5X4 RNU6-209P-201ENST00000384118 107 ntBASIC2.56□□□□□ -2
NR2E3Q9Y5X4 RNU6-160P-201ENST00000384591 107 ntBASIC2.56□□□□□ -2
NR2E3Q9Y5X4 MIR29C-201ENST00000385231 88 ntBASIC2.56□□□□□ -2
NR2E3Q9Y5X4 SNORA11.4-201ENST00000408823 129 ntBASIC2.56□□□□□ -2
NR2E3Q9Y5X4 RNU2-61P-201ENST00000411069 191 ntBASIC2.56□□□□□ -2
NR2E3Q9Y5X4 SUMO1P2-201ENST00000452524 304 ntBASIC2.56□□□□□ -2
NR2E3Q9Y5X4 RNU1-131P-201ENST00000458943 161 ntBASIC2.56□□□□□ -2
NR2E3Q9Y5X4 COX6CP14-201ENST00000469580 174 ntBASIC2.56□□□□□ -2
NR2E3Q9Y5X4 RNA5SP82-201ENST00000516707 92 ntBASIC2.56□□□□□ -2
NR2E3Q9Y5X4 RNA5SP137-201ENST00000516833 135 ntBASIC2.56□□□□□ -2
NR2E3Q9Y5X4 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.56□□□□□ -2
NR2E3Q9Y5X4 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.56□□□□□ -2
NR2E3Q9Y5X4 MIR5092-201ENST00000583139 88 ntBASIC2.56□□□□□ -2
NR2E3Q9Y5X4 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
NR2E3Q9Y5X4 MIR378A-201ENST00000362177 66 ntBASIC2.55□□□□□ -2
NR2E3Q9Y5X4 RNU6-514P-201ENST00000384208 107 ntBASIC2.55□□□□□ -2
NR2E3Q9Y5X4 AL031003.1-201ENST00000404229 172 ntBASIC2.55□□□□□ -2
NR2E3Q9Y5X4 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.55□□□□□ -2
NR2E3Q9Y5X4 PIGPP3-201ENST00000425307 415 ntBASIC2.55□□□□□ -2
NR2E3Q9Y5X4 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.55□□□□□ -2
NR2E3Q9Y5X4 Y_RNA.644-201ENST00000459006 113 ntBASIC2.55□□□□□ -2
NR2E3Q9Y5X4 Y_RNA.637-201ENST00000459424 114 ntBASIC2.55□□□□□ -2
NR2E3Q9Y5X4 Y_RNA.674-201ENST00000516362 113 ntBASIC2.55□□□□□ -2
NR2E3Q9Y5X4 AC025647.1-201ENST00000517879 253 ntBASIC2.55□□□□□ -2
NR2E3Q9Y5X4 AL008718.3-201ENST00000610217 321 ntBASIC2.55□□□□□ -2
NR2E3Q9Y5X4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.55□□□□□ -2
NR2E3Q9Y5X4 snoU18.1-201ENST00000629629 71 ntBASIC2.55□□□□□ -2
NR2E3Q9Y5X4 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.55□□□□□ -2
NR2E3Q9Y5X4 RNU6-47P-201ENST00000383866 107 ntBASIC2.54□□□□□ -2
NR2E3Q9Y5X4 SNORA67.3-201ENST00000384366 140 ntBASIC2.54□□□□□ -2
NR2E3Q9Y5X4 Y_RNA.555-201ENST00000384673 110 ntBASIC2.54□□□□□ -2
NR2E3Q9Y5X4 Y_RNA.590-201ENST00000410140 107 ntBASIC2.54□□□□□ -2
NR2E3Q9Y5X4 RNU6-321P-201ENST00000410912 106 ntBASIC2.54□□□□□ -2
NR2E3Q9Y5X4 RNU6-182P-201ENST00000516970 105 ntBASIC2.54□□□□□ -2
NR2E3Q9Y5X4 MIR5007-201ENST00000583098 95 ntBASIC2.54□□□□□ -2
NR2E3Q9Y5X4 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.54□□□□□ -2
NR2E3Q9Y5X4 MIR8070-201ENST00000616510 88 ntBASIC2.54□□□□□ -2
NR2E3Q9Y5X4 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
NR2E3Q9Y5X4 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.54□□□□□ -2
NR2E3Q9Y5X4 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
NR2E3Q9Y5X4 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
NR2E3Q9Y5X4 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.53□□□□□ -2
NR2E3Q9Y5X4 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
NR2E3Q9Y5X4 RNU6-1272P-201ENST00000362776 107 ntBASIC2.53□□□□□ -2
NR2E3Q9Y5X4 RNU6-801P-201ENST00000364087 105 ntBASIC2.53□□□□□ -2
NR2E3Q9Y5X4 SNORA40.19-201ENST00000390846 128 ntBASIC2.53□□□□□ -2
NR2E3Q9Y5X4 AC107393.1-201ENST00000512403 346 ntBASIC2.53□□□□□ -2
NR2E3Q9Y5X4 MIR5694-201ENST00000581190 76 ntBASIC2.53□□□□□ -2
NR2E3Q9Y5X4 AL512605.2-201ENST00000592972 256 ntBASIC2.53□□□□□ -2
NR2E3Q9Y5X4 AL031274.2-201ENST00000599419 203 ntBASIC2.53□□□□□ -2
NR2E3Q9Y5X4 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
NR2E3Q9Y5X4 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
NR2E3Q9Y5X4 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.53□□□□□ -2.01
NR2E3Q9Y5X4 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.53□□□□□ -2.01
NR2E3Q9Y5X4 Y_RNA.150-201ENST00000363562 102 ntBASIC2.52□□□□□ -2.01
NR2E3Q9Y5X4 RNU6-1240P-201ENST00000365155 104 ntBASIC2.52□□□□□ -2.01
NR2E3Q9Y5X4 RNU1-51P-201ENST00000365345 176 ntBASIC2.52□□□□□ -2.01
NR2E3Q9Y5X4 RNU6-211P-201ENST00000384047 107 ntBASIC2.52□□□□□ -2.01
NR2E3Q9Y5X4 MIR583-201ENST00000384846 75 ntBASIC2.52□□□□□ -2.01
NR2E3Q9Y5X4 AL355796.1-201ENST00000406706 323 ntBASIC2.52□□□□□ -2.01
NR2E3Q9Y5X4 CYCSP49-201ENST00000420810 319 ntBASIC2.52□□□□□ -2.01
NR2E3Q9Y5X4 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.52□□□□□ -2.01
NR2E3Q9Y5X4 RNU7-120P-201ENST00000459334 63 ntBASIC2.52□□□□□ -2.01
NR2E3Q9Y5X4 RNY3P16-201ENST00000516338 101 ntBASIC2.52□□□□□ -2.01
NR2E3Q9Y5X4 AC022202.1-201ENST00000613515 211 ntBASIC2.52□□□□□ -2.01
NR2E3Q9Y5X4 AC073349.3-201ENST00000617616 186 ntBASIC2.52□□□□□ -2.01
NR2E3Q9Y5X4 AC006435.5-201ENST00000624486 112 ntBASIC2.52□□□□□ -2.01
NR2E3Q9Y5X4 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
NR2E3Q9Y5X4 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.51□□□□□ -2.01
NR2E3Q9Y5X4 MIR21-201ENST00000362134 72 ntBASIC2.51□□□□□ -2.01
NR2E3Q9Y5X4 SNORD114-7-201ENST00000362520 77 ntBASIC2.51□□□□□ -2.01
NR2E3Q9Y5X4 RNU6-653P-201ENST00000363074 106 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms