Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC9Q9Y3X0 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC9Q9Y3X0 Z98949.2-201ENST00000440996 144 ntBASIC3.13□□□□□ -1.91
CCDC9Q9Y3X0 RNU7-94P-201ENST00000459576 63 ntBASIC3.13□□□□□ -1.91
CCDC9Q9Y3X0 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC9Q9Y3X0 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC9Q9Y3X0 RNU1-17P-201ENST00000363022 152 ntBASIC3.12□□□□□ -1.91
CCDC9Q9Y3X0 Y_RNA.176-201ENST00000363815 109 ntBASIC3.12□□□□□ -1.91
CCDC9Q9Y3X0 Y_RNA.476-201ENST00000384347 108 ntBASIC3.12□□□□□ -1.91
CCDC9Q9Y3X0 RNU6-121P-201ENST00000410525 99 ntBASIC3.12□□□□□ -1.91
CCDC9Q9Y3X0 RNU6-847P-201ENST00000411115 108 ntBASIC3.12□□□□□ -1.91
CCDC9Q9Y3X0 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.12□□□□□ -1.91
CCDC9Q9Y3X0 HSPE1P13-201ENST00000451143 297 ntBASIC3.12□□□□□ -1.91
CCDC9Q9Y3X0 RPS26P45-201ENST00000471748 340 ntBASIC3.12□□□□□ -1.91
CCDC9Q9Y3X0 RPS27P21-201ENST00000486977 252 ntBASIC3.12□□□□□ -1.91
CCDC9Q9Y3X0 RNU7-128P-201ENST00000517247 62 ntBASIC3.12□□□□□ -1.91
CCDC9Q9Y3X0 AP003733.2-201ENST00000529409 171 ntBASIC3.12□□□□□ -1.91
CCDC9Q9Y3X0 MIR4498-201ENST00000577599 66 ntBASIC3.12□□□□□ -1.91
CCDC9Q9Y3X0 U6.108-201ENST00000637764 58 ntBASIC3.12□□□□□ -1.91
CCDC9Q9Y3X0 SNORD81.1-201ENST00000363064 77 ntBASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 SNORA63D-201ENST00000364359 132 ntBASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 Y_RNA.286-201ENST00000364813 102 ntBASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 Y_RNA.383-201ENST00000383855 97 ntBASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 Y_RNA.581-201ENST00000391017 97 ntBASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 SNORD88.1-201ENST00000408684 91 ntBASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 RNU2-61P-201ENST00000411069 191 ntBASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 RNA5SP233-201ENST00000459153 113 ntBASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 RNU6-496P-201ENST00000516145 99 ntBASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 RNU6-1271P-201ENST00000517049 105 ntBASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 DEFB117-201ENST00000602356 141 ntBASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 PRR13P7-201ENST00000605538 430 ntBASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.11□□□□□ -1.91
CCDC9Q9Y3X0 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
CCDC9Q9Y3X0 Y_RNA.64-201ENST00000362845 102 ntBASIC3.1□□□□□ -1.91
CCDC9Q9Y3X0 RNU6-806P-201ENST00000365147 105 ntBASIC3.1□□□□□ -1.91
CCDC9Q9Y3X0 RNU6-1109P-201ENST00000391187 107 ntBASIC3.1□□□□□ -1.91
CCDC9Q9Y3X0 AL356379.1-201ENST00000414105 126 ntBASIC3.1□□□□□ -1.91
CCDC9Q9Y3X0 DYNLT3P2-201ENST00000442517 295 ntBASIC3.1□□□□□ -1.91
CCDC9Q9Y3X0 SNORA31.17-201ENST00000516953 127 ntBASIC3.1□□□□□ -1.91
CCDC9Q9Y3X0 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC9Q9Y3X0 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC9Q9Y3X0 MIR3670-2-201ENST00000582974 65 ntBASIC3.1□□□□□ -1.91
CCDC9Q9Y3X0 MIR3670-1-201ENST00000584160 65 ntBASIC3.1□□□□□ -1.91
CCDC9Q9Y3X0 MIR3670-3-201ENST00000584855 65 ntBASIC3.1□□□□□ -1.91
CCDC9Q9Y3X0 MIR3670-4-201ENST00000612260 65 ntBASIC3.1□□□□□ -1.91
CCDC9Q9Y3X0 RNU6-102P-201ENST00000384485 104 ntBASIC3.09□□□□□ -1.91
CCDC9Q9Y3X0 RNU6-296P-201ENST00000384608 107 ntBASIC3.09□□□□□ -1.91
CCDC9Q9Y3X0 SNORA80E-201ENST00000384744 137 ntBASIC3.09□□□□□ -1.91
CCDC9Q9Y3X0 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
CCDC9Q9Y3X0 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
CCDC9Q9Y3X0 RPL21P38-201ENST00000418090 167 ntBASIC3.09□□□□□ -1.91
CCDC9Q9Y3X0 RNU6-1337P-201ENST00000516525 95 ntBASIC3.09□□□□□ -1.91
CCDC9Q9Y3X0 RNA5SP481-201ENST00000516814 122 ntBASIC3.09□□□□□ -1.91
CCDC9Q9Y3X0 AL627230.6-201ENST00000611129 280 ntBASIC3.09□□□□□ -1.91
CCDC9Q9Y3X0 PLD1-217ENST00000627725 174 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC9Q9Y3X0 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC3.09□□□□□ -1.91
CCDC9Q9Y3X0 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC9Q9Y3X0 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.09□□□□□ -1.91
CCDC9Q9Y3X0 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC3.09□□□□□ -1.92
CCDC9Q9Y3X0 AC018630.2-201ENST00000534866 2403 ntBASIC3.08□□□□□ -1.92
CCDC9Q9Y3X0 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC9Q9Y3X0 HSPE1P25-201ENST00000455484 251 ntBASIC3.08□□□□□ -1.92
CCDC9Q9Y3X0 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC9Q9Y3X0 RPL23AP63-201ENST00000498752 471 ntBASIC3.08□□□□□ -1.92
CCDC9Q9Y3X0 AC037487.3-201ENST00000606668 112 ntBASIC3.08□□□□□ -1.92
CCDC9Q9Y3X0 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC9Q9Y3X0 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
CCDC9Q9Y3X0 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 RNU6-290P-201ENST00000365212 101 ntBASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 Y_RNA.556-201ENST00000384677 113 ntBASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 Y_RNA.574-201ENST00000384766 95 ntBASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 RNU6-855P-201ENST00000410395 104 ntBASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 AC098869.1-201ENST00000481627 292 ntBASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 RN7SL297P-201ENST00000483161 293 ntBASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 RPL36AP21-201ENST00000490372 323 ntBASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 SNORA31.11-201ENST00000516528 139 ntBASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 RNA5SP437-201ENST00000517249 129 ntBASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 MIR3145-201ENST00000580727 82 ntBASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 MIR4713-201ENST00000582691 75 ntBASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 AC010900.2-201ENST00000604508 210 ntBASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.07□□□□□ -1.92
CCDC9Q9Y3X0 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 Y_RNA.26-201ENST00000362539 101 ntBASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 RNU6-238P-201ENST00000363313 106 ntBASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 Y_RNA.508-201ENST00000384502 114 ntBASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 Y_RNA.569-201ENST00000384749 103 ntBASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 MIR562-201ENST00000384894 95 ntBASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 RNA5SP109-201ENST00000391010 116 ntBASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 RNU6-1248P-201ENST00000391096 64 ntBASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 SNORA53-201ENST00000391141 249 ntBASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 AL023284.1-201ENST00000403956 276 ntBASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC9Q9Y3X0 RNU6-63P-201ENST00000516690 95 ntBASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms