Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 Y_RNA.574-201ENST00000384766 95 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 RNU4-30P-201ENST00000410245 143 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 RNY3P15-201ENST00000516297 97 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 RNU6-107P-201ENST00000516643 102 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 RNU2-12P-201ENST00000517216 168 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 AL161670.1-201ENST00000554348 137 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 AC015720.1-201ENST00000565251 277 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 MIR4421-201ENST00000578133 69 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 MIR4753-201ENST00000585119 83 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 PRR13P7-201ENST00000605538 430 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 AC130454.1-201ENST00000622948 401 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 AC022513.1-201ENST00000624512 117 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 MIR3674-201ENST00000636576 68 ntBASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.73□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.47-201ENST00000362697 108 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 RNU6-238P-201ENST00000363313 106 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 RNU6-438P-201ENST00000365561 103 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 RNU6-472P-201ENST00000384299 107 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 MT-TW-201ENST00000387382 68 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 RNU6-57P-201ENST00000411348 103 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 MTCYBP9-201ENST00000431021 303 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 AL731563.1-201ENST00000442202 214 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 HSPE1P25-201ENST00000455484 251 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 RNU6-221P-201ENST00000459541 99 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 MTCO2P24-201ENST00000515611 426 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 SNORA31.24-201ENST00000517232 57 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 AC022441.3-201ENST00000605737 136 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 AL590240.4-201ENST00000616908 390 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 snoZ196.1-201ENST00000625269 89 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 LINC02555-201ENST00000563933 1951 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 ZNF209P-201ENST00000593450 2304 ntBASIC1.72□□□□□ -2.13
UPF3AQ9H1J1 Y_RNA.99-201ENST00000363138 105 ntBASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 RNU6-1175P-201ENST00000365200 107 ntBASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.462-201ENST00000384268 102 ntBASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 RNU6-1235P-201ENST00000384559 107 ntBASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 AC060773.1-201ENST00000421698 310 ntBASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 AC096920.1-201ENST00000423991 241 ntBASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 TOMM22P2-201ENST00000430735 237 ntBASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 RNU6-498P-201ENST00000459468 107 ntBASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 RNU6-496P-201ENST00000516145 99 ntBASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 RNU6-856P-201ENST00000516959 98 ntBASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 AC025647.1-201ENST00000517879 253 ntBASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 AP003733.2-201ENST00000529409 171 ntBASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 AC005176.2-201ENST00000596933 147 ntBASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 MIR376A1-201ENST00000616574 68 ntBASIC1.71□□□□□ -2.14
UPF3AQ9H1J1 SNORD115-30-201ENST00000364117 82 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.230-201ENST00000364348 109 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.396-201ENST00000383949 103 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.446-201ENST00000384178 104 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.541-201ENST00000384640 113 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 MIR518E-201ENST00000385252 88 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 AL355796.1-201ENST00000406706 323 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 MIR1283-2-201ENST00000408621 87 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 AL357134.1-201ENST00000445848 426 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 RNA5SP137-201ENST00000516833 135 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 SNORA40.15-201ENST00000516884 107 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 MIR3169-201ENST00000578032 83 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 MIR4503-201ENST00000582187 83 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 AL031274.2-201ENST00000599419 203 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 AC005828.6-201ENST00000606610 232 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 MIR8062-201ENST00000621515 85 ntBASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.16-201ENST00000362421 102 ntBASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.84-201ENST00000363011 104 ntBASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.118-201ENST00000363300 101 ntBASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 SNORD113-8-201ENST00000363497 74 ntBASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.361-201ENST00000365515 120 ntBASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.376-201ENST00000365638 108 ntBASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.483-201ENST00000384380 101 ntBASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.581-201ENST00000391017 97 ntBASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 RNU2-54P-201ENST00000410299 190 ntBASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.602-201ENST00000410535 92 ntBASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 RNU6-948P-201ENST00000516374 107 ntBASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.713-201ENST00000517013 96 ntBASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 MIR6504-201ENST00000613520 61 ntBASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 AC127459.3-201ENST00000624328 466 ntBASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 U6.115-201ENST00000636045 103 ntBASIC1.69□□□□□ -2.14
UPF3AQ9H1J1 SNORD115-3-201ENST00000363100 82 ntBASIC1.68□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.152-201ENST00000363578 100 ntBASIC1.68□□□□□ -2.14
UPF3AQ9H1J1 Y_RNA.176-201ENST00000363815 109 ntBASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms