Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 MIR3664-201ENST00000579074 99 ntBASIC1.01□□□□□ -2.25
RPUSD4Q96CM3 MIR4423-201ENST00000580922 80 ntBASIC1.01□□□□□ -2.25
RPUSD4Q96CM3 MIR548S-201ENST00000581352 82 ntBASIC1.01□□□□□ -2.25
RPUSD4Q96CM3 AL513534.2-201ENST00000603836 250 ntBASIC1.01□□□□□ -2.25
RPUSD4Q96CM3 LARP7P1-201ENST00000605576 316 ntBASIC1.01□□□□□ -2.25
RPUSD4Q96CM3 MIR4272-201ENST00000635924 64 ntBASIC1.01□□□□□ -2.25
RPUSD4Q96CM3 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1□□□□□ -2.25
RPUSD4Q96CM3 RNY3P14-201ENST00000384309 102 ntBASIC1□□□□□ -2.25
RPUSD4Q96CM3 MIR1285-1-201ENST00000408593 84 ntBASIC1□□□□□ -2.25
RPUSD4Q96CM3 Y_RNA.605-201ENST00000410577 105 ntBASIC1□□□□□ -2.25
RPUSD4Q96CM3 RNU2-61P-201ENST00000411069 191 ntBASIC1□□□□□ -2.25
RPUSD4Q96CM3 RNU6-1199P-201ENST00000411249 104 ntBASIC1□□□□□ -2.25
RPUSD4Q96CM3 RNU6-1304P-201ENST00000411374 106 ntBASIC1□□□□□ -2.25
RPUSD4Q96CM3 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1□□□□□ -2.25
RPUSD4Q96CM3 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1□□□□□ -2.25
RPUSD4Q96CM3 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1□□□□□ -2.25
RPUSD4Q96CM3 OR2A41P-201ENST00000473586 105 ntBASIC1□□□□□ -2.25
RPUSD4Q96CM3 Y_RNA.702-201ENST00000516843 96 ntBASIC1□□□□□ -2.25
RPUSD4Q96CM3 AC019176.1-201ENST00000518519 225 ntBASIC1□□□□□ -2.25
RPUSD4Q96CM3 AC023442.1-201ENST00000531247 422 ntBASIC1□□□□□ -2.25
RPUSD4Q96CM3 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1□□□□□ -2.25
RPUSD4Q96CM3 AL138825.1-201ENST00000618587 192 ntBASIC1□□□□□ -2.25
RPUSD4Q96CM3 ZNF209P-201ENST00000593450 2304 ntBASIC1□□□□□ -2.25
RPUSD4Q96CM3 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 SNORA1B-201ENST00000362535 133 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 Y_RNA.101-201ENST00000363154 102 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 Y_RNA.314-201ENST00000365114 102 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 RNA5SP259-201ENST00000365541 109 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 Y_RNA.428-201ENST00000384078 102 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 RNU6-505P-201ENST00000384427 107 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 Y_RNA.529-201ENST00000384586 119 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 RNU6-376P-201ENST00000384731 106 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 MIR1261-201ENST00000408659 82 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 MRPL35P3-201ENST00000421557 364 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 AC236972.2-201ENST00000434979 310 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 AL162725.1-201ENST00000435405 301 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 STAG3L5P-204ENST00000443759 179 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 CHEK2P4-201ENST00000450340 246 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 RNU6-976P-201ENST00000516086 111 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 RNU2-56P-201ENST00000516826 190 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 SNORD116.3-201ENST00000517176 78 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 AC005176.2-201ENST00000596933 147 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 AC006380.1-201ENST00000603598 186 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 AC022441.3-201ENST00000605737 136 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 AL021879.1-201ENST00000611756 288 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 SNORD3E-202ENST00000627253 216 ntBASIC0.99□□□□□ -2.25
RPUSD4Q96CM3 MIRLET7C-201ENST00000362160 84 ntBASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 MIR628-201ENST00000385229 95 ntBASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 AL031003.1-201ENST00000404229 172 ntBASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 RPS29P28-201ENST00000446439 141 ntBASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 RNU1-123P-201ENST00000458950 160 ntBASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 RN7SL429P-201ENST00000479090 223 ntBASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 RN7SL489P-201ENST00000486185 223 ntBASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 RN7SL327P-201ENST00000488659 223 ntBASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 SNORA40.14-201ENST00000516543 86 ntBASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 RNA5SP168-201ENST00000516642 112 ntBASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 SUMO2P16-201ENST00000519475 264 ntBASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 AL161670.1-201ENST00000554348 137 ntBASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 MIR4659A-201ENST00000580269 81 ntBASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 RN7SL853P-201ENST00000617250 223 ntBASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 U6.92-201ENST00000636464 89 ntBASIC0.98□□□□□ -2.25
RPUSD4Q96CM3 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 RNU6-626P-201ENST00000363354 107 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 Y_RNA.146-201ENST00000363549 102 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 RNU4-76P-201ENST00000364509 141 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 RNU6-20P-201ENST00000384106 107 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 Y_RNA.462-201ENST00000384268 102 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 Y_RNA.496-201ENST00000384444 101 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 Y_RNA.570-201ENST00000384750 101 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 MT-TD-201ENST00000387419 68 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 AL390729.2-201ENST00000416137 156 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 AC092991.1-201ENST00000477176 376 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 MTND3P22-201ENST00000510932 243 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 RNU6-1096P-201ENST00000517089 102 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 AC022616.4-201ENST00000522985 181 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 AC090049.2-201ENST00000550377 109 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 AC019288.1-201ENST00000557918 224 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 CYP3A52P-201ENST00000563326 91 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 AP001094.1-201ENST00000579805 193 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 MIR4762-201ENST00000585261 75 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 AC084781.2-201ENST00000615568 161 ntBASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.97□□□□□ -2.25
RPUSD4Q96CM3 Y_RNA.5-201ENST00000362334 102 ntBASIC0.96□□□□□ -2.26
RPUSD4Q96CM3 RNU6-199P-201ENST00000362954 107 ntBASIC0.96□□□□□ -2.26
RPUSD4Q96CM3 RNY3P11-201ENST00000364153 102 ntBASIC0.96□□□□□ -2.26
RPUSD4Q96CM3 U8.5-201ENST00000364528 136 ntBASIC0.96□□□□□ -2.26
RPUSD4Q96CM3 Y_RNA.265-201ENST00000364677 108 ntBASIC0.96□□□□□ -2.26
RPUSD4Q96CM3 SNORA25.8-201ENST00000364831 128 ntBASIC0.96□□□□□ -2.26
RPUSD4Q96CM3 Y_RNA.315-201ENST00000365117 102 ntBASIC0.96□□□□□ -2.26
RPUSD4Q96CM3 SNORA22-201ENST00000383907 134 ntBASIC0.96□□□□□ -2.26
RPUSD4Q96CM3 Y_RNA.446-201ENST00000384178 104 ntBASIC0.96□□□□□ -2.26
RPUSD4Q96CM3 SNORA22C-201ENST00000384614 134 ntBASIC0.96□□□□□ -2.26
RPUSD4Q96CM3 U8.16-201ENST00000391279 133 ntBASIC0.96□□□□□ -2.26
RPUSD4Q96CM3 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms