Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC127459.3-201ENST00000624328 466 ntBASIC1.16□□□□□ -2.22
SDC1P18827 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.16□□□□□ -2.22
SDC1P18827 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
SDC1P18827 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
SDC1P18827 AC091812.1-201ENST00000432235 1948 ntBASIC1.15□□□□□ -2.22
SDC1P18827 SNORA1B-201ENST00000362535 133 ntBASIC1.15□□□□□ -2.23
SDC1P18827 Y_RNA.140-201ENST00000363474 103 ntBASIC1.15□□□□□ -2.23
SDC1P18827 Y_RNA.356-201ENST00000365475 113 ntBASIC1.15□□□□□ -2.23
SDC1P18827 RNU6-1065P-201ENST00000384513 106 ntBASIC1.15□□□□□ -2.23
SDC1P18827 MIR628-201ENST00000385229 95 ntBASIC1.15□□□□□ -2.23
SDC1P18827 MIR660-201ENST00000385235 97 ntBASIC1.15□□□□□ -2.23
SDC1P18827 SNORD78.2-201ENST00000391076 69 ntBASIC1.15□□□□□ -2.23
SDC1P18827 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.15□□□□□ -2.23
SDC1P18827 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.15□□□□□ -2.23
SDC1P18827 SUMO1P2-201ENST00000452524 304 ntBASIC1.15□□□□□ -2.23
SDC1P18827 RNU6-1278P-201ENST00000516130 107 ntBASIC1.15□□□□□ -2.23
SDC1P18827 RNU6-1291P-201ENST00000516591 104 ntBASIC1.15□□□□□ -2.23
SDC1P18827 RNU6-63P-201ENST00000516690 95 ntBASIC1.15□□□□□ -2.23
SDC1P18827 Y_RNA.702-201ENST00000516843 96 ntBASIC1.15□□□□□ -2.23
SDC1P18827 RNU6-341P-201ENST00000516973 96 ntBASIC1.15□□□□□ -2.23
SDC1P18827 AL512310.8-201ENST00000550183 120 ntBASIC1.15□□□□□ -2.23
SDC1P18827 AL162424.1-201ENST00000602325 221 ntBASIC1.15□□□□□ -2.23
SDC1P18827 AC112487.2-201ENST00000637950 304 ntBASIC1.15□□□□□ -2.23
SDC1P18827 RNU6-1115P-201ENST00000362490 106 ntBASIC1.14□□□□□ -2.23
SDC1P18827 Y_RNA.187-201ENST00000363918 113 ntBASIC1.14□□□□□ -2.23
SDC1P18827 Y_RNA.496-201ENST00000384444 101 ntBASIC1.14□□□□□ -2.23
SDC1P18827 RNU5A-5P-201ENST00000411054 116 ntBASIC1.14□□□□□ -2.23
SDC1P18827 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.14□□□□□ -2.23
SDC1P18827 MTCO2P27-201ENST00000420740 428 ntBASIC1.14□□□□□ -2.23
SDC1P18827 CALM2P4-201ENST00000430810 426 ntBASIC1.14□□□□□ -2.23
SDC1P18827 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.14□□□□□ -2.23
SDC1P18827 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.14□□□□□ -2.23
SDC1P18827 RNU7-95P-201ENST00000459222 64 ntBASIC1.14□□□□□ -2.23
SDC1P18827 AC092991.1-201ENST00000477176 376 ntBASIC1.14□□□□□ -2.23
SDC1P18827 OR9P1P-201ENST00000496431 281 ntBASIC1.14□□□□□ -2.23
SDC1P18827 RNU6-966P-201ENST00000516479 104 ntBASIC1.14□□□□□ -2.23
SDC1P18827 RNU6-911P-201ENST00000516523 104 ntBASIC1.14□□□□□ -2.23
SDC1P18827 RNU2-56P-201ENST00000516826 190 ntBASIC1.14□□□□□ -2.23
SDC1P18827 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.14□□□□□ -2.23
SDC1P18827 CYP3A52P-201ENST00000563326 91 ntBASIC1.14□□□□□ -2.23
SDC1P18827 MIR4778-201ENST00000577635 80 ntBASIC1.14□□□□□ -2.23
SDC1P18827 MIR4659A-201ENST00000580269 81 ntBASIC1.14□□□□□ -2.23
SDC1P18827 AL050343.2-201ENST00000607338 280 ntBASIC1.14□□□□□ -2.23
SDC1P18827 AC240442.1-201ENST00000616055 283 ntBASIC1.14□□□□□ -2.23
SDC1P18827 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.14□□□□□ -2.23
SDC1P18827 SNORD3E-202ENST00000627253 216 ntBASIC1.14□□□□□ -2.23
SDC1P18827 U6.92-201ENST00000636464 89 ntBASIC1.14□□□□□ -2.23
SDC1P18827 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
SDC1P18827 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.14□□□□□ -2.23
SDC1P18827 SNORD114-7-201ENST00000362520 77 ntBASIC1.13□□□□□ -2.23
SDC1P18827 Y_RNA.58-201ENST00000362807 102 ntBASIC1.13□□□□□ -2.23
SDC1P18827 Y_RNA.154-201ENST00000363624 102 ntBASIC1.13□□□□□ -2.23
SDC1P18827 Y_RNA.265-201ENST00000364677 108 ntBASIC1.13□□□□□ -2.23
SDC1P18827 RNY3P1-201ENST00000365085 102 ntBASIC1.13□□□□□ -2.23
SDC1P18827 RNY3-201ENST00000365484 102 ntBASIC1.13□□□□□ -2.23
SDC1P18827 RNU6-20P-201ENST00000384106 107 ntBASIC1.13□□□□□ -2.23
SDC1P18827 RNU6-505P-201ENST00000384427 107 ntBASIC1.13□□□□□ -2.23
SDC1P18827 RNU6-136P-201ENST00000384663 107 ntBASIC1.13□□□□□ -2.23
SDC1P18827 RNU11-5P-201ENST00000391216 129 ntBASIC1.13□□□□□ -2.23
SDC1P18827 AF228730.4-201ENST00000421457 183 ntBASIC1.13□□□□□ -2.23
SDC1P18827 RN7SKP179-201ENST00000516126 217 ntBASIC1.13□□□□□ -2.23
SDC1P18827 RNU6-1096P-201ENST00000517089 102 ntBASIC1.13□□□□□ -2.23
SDC1P18827 AC006600.1-201ENST00000572529 153 ntBASIC1.13□□□□□ -2.23
SDC1P18827 SNORA28-201ENST00000606769 126 ntBASIC1.13□□□□□ -2.23
SDC1P18827 AC104985.2-201ENST00000620598 500 ntBASIC1.13□□□□□ -2.23
SDC1P18827 AC106754.2-201ENST00000623006 233 ntBASIC1.13□□□□□ -2.23
SDC1P18827 AC091925.1-201ENST00000623204 462 ntBASIC1.13□□□□□ -2.23
SDC1P18827 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.13□□□□□ -2.23
SDC1P18827 MIR4272-201ENST00000635924 64 ntBASIC1.13□□□□□ -2.23
SDC1P18827 AC005592.1-201ENST00000566527 1640 ntBASIC1.13□□□□□ -2.23
SDC1P18827 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
SDC1P18827 Y_RNA.27-201ENST00000362540 103 ntBASIC1.12□□□□□ -2.23
SDC1P18827 Y_RNA.428-201ENST00000384078 102 ntBASIC1.12□□□□□ -2.23
SDC1P18827 RNU6-424P-201ENST00000384367 105 ntBASIC1.12□□□□□ -2.23
SDC1P18827 U8.16-201ENST00000391279 133 ntBASIC1.12□□□□□ -2.23
SDC1P18827 AL031003.1-201ENST00000404229 172 ntBASIC1.12□□□□□ -2.23
SDC1P18827 RNU2-54P-201ENST00000410299 190 ntBASIC1.12□□□□□ -2.23
SDC1P18827 RNU6-1199P-201ENST00000411249 104 ntBASIC1.12□□□□□ -2.23
SDC1P18827 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC1.12□□□□□ -2.23
SDC1P18827 RPL39P38-201ENST00000467018 153 ntBASIC1.12□□□□□ -2.23
SDC1P18827 RPL30P7-201ENST00000479312 323 ntBASIC1.12□□□□□ -2.23
SDC1P18827 RNA5SP168-201ENST00000516642 112 ntBASIC1.12□□□□□ -2.23
SDC1P18827 SNORD116.3-201ENST00000517176 78 ntBASIC1.12□□□□□ -2.23
SDC1P18827 AP002004.2-201ENST00000531656 154 ntBASIC1.12□□□□□ -2.23
SDC1P18827 MIR3664-201ENST00000579074 99 ntBASIC1.12□□□□□ -2.23
SDC1P18827 AC005176.2-201ENST00000596933 147 ntBASIC1.12□□□□□ -2.23
SDC1P18827 RNU6-626P-201ENST00000363354 107 ntBASIC1.11□□□□□ -2.23
SDC1P18827 SNORA7.1-201ENST00000363750 139 ntBASIC1.11□□□□□ -2.23
SDC1P18827 MIR562-201ENST00000384894 95 ntBASIC1.11□□□□□ -2.23
SDC1P18827 MIR520G-201ENST00000385064 90 ntBASIC1.11□□□□□ -2.23
SDC1P18827 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.11□□□□□ -2.23
SDC1P18827 RNU6-482P-201ENST00000391068 107 ntBASIC1.11□□□□□ -2.23
SDC1P18827 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.11□□□□□ -2.23
SDC1P18827 AL591704.2-201ENST00000421658 181 ntBASIC1.11□□□□□ -2.23
SDC1P18827 RNU6-1337P-201ENST00000516525 95 ntBASIC1.11□□□□□ -2.23
SDC1P18827 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC1.11□□□□□ -2.23
SDC1P18827 VN1R91P-201ENST00000594377 169 ntBASIC1.11□□□□□ -2.23
SDC1P18827 AC006380.1-201ENST00000603598 186 ntBASIC1.11□□□□□ -2.23
SDC1P18827 MIR26B-201ENST00000362251 77 ntBASIC1.1□□□□□ -2.23
SDC1P18827 Y_RNA.146-201ENST00000363549 102 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 136.2 ms