Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 Y_RNA.446-201ENST00000384178 104 ntBASIC1.81□□□□□ -2.12
HOXC11O43248 AL034345.1-201ENST00000407768 123 ntBASIC1.81□□□□□ -2.12
HOXC11O43248 MIR1302-11-201ENST00000408051 138 ntBASIC1.81□□□□□ -2.12
HOXC11O43248 MIR1302-9-201ENST00000408365 138 ntBASIC1.81□□□□□ -2.12
HOXC11O43248 MIR1302-10-201ENST00000408734 138 ntBASIC1.81□□□□□ -2.12
HOXC11O43248 RNU5A-5P-201ENST00000411054 116 ntBASIC1.81□□□□□ -2.12
HOXC11O43248 SNORD13-201ENST00000459299 104 ntBASIC1.81□□□□□ -2.12
HOXC11O43248 MIR3122-201ENST00000577243 73 ntBASIC1.81□□□□□ -2.12
HOXC11O43248 SNORA77B-201ENST00000578179 125 ntBASIC1.81□□□□□ -2.12
HOXC11O43248 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.81□□□□□ -2.12
HOXC11O43248 MIR1302-2-201ENST00000607096 138 ntBASIC1.81□□□□□ -2.12
HOXC11O43248 MIR8081-201ENST00000611533 95 ntBASIC1.81□□□□□ -2.12
HOXC11O43248 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.81□□□□□ -2.12
HOXC11O43248 AC006026.1-201ENST00000444025 1803 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 Y_RNA.140-201ENST00000363474 103 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 Y_RNA.267-201ENST00000364679 109 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 RNU6-1175P-201ENST00000365200 107 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 Y_RNA.458-201ENST00000384240 102 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 Y_RNA.471-201ENST00000384312 102 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 RNU6-505P-201ENST00000384427 107 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 RNU6-1031P-201ENST00000384773 107 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 RNU6-308P-201ENST00000390957 107 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 SNORA17.3-201ENST00000391159 129 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 AL031003.1-201ENST00000404229 172 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 RPL23AP36-201ENST00000413895 458 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 MTND4P19-201ENST00000446659 478 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 Y_RNA.631-201ENST00000459607 101 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 RNU2-56P-201ENST00000516826 190 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 RNU6-988P-201ENST00000519081 107 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 SNORA28-201ENST00000606769 126 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.8□□□□□ -2.12
HOXC11O43248 AC091812.1-201ENST00000432235 1948 ntBASIC1.79□□□□□ -2.12
HOXC11O43248 RNU6-203P-201ENST00000384038 104 ntBASIC1.79□□□□□ -2.12
HOXC11O43248 AC108667.1-201ENST00000428618 249 ntBASIC1.79□□□□□ -2.12
HOXC11O43248 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.79□□□□□ -2.12
HOXC11O43248 MIR4422-201ENST00000581938 83 ntBASIC1.79□□□□□ -2.12
HOXC11O43248 AC022441.3-201ENST00000605737 136 ntBASIC1.79□□□□□ -2.12
HOXC11O43248 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.79□□□□□ -2.12
HOXC11O43248 MIR126-201ENST00000362291 85 ntBASIC1.78□□□□□ -2.12
HOXC11O43248 SNORD33-201ENST00000362761 85 ntBASIC1.78□□□□□ -2.12
HOXC11O43248 Y_RNA.128-201ENST00000363391 112 ntBASIC1.78□□□□□ -2.12
HOXC11O43248 Y_RNA.265-201ENST00000364677 108 ntBASIC1.78□□□□□ -2.12
HOXC11O43248 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.78□□□□□ -2.12
HOXC11O43248 Y_RNA.462-201ENST00000384268 102 ntBASIC1.78□□□□□ -2.12
HOXC11O43248 MIR520G-201ENST00000385064 90 ntBASIC1.78□□□□□ -2.12
HOXC11O43248 AC004965.1-201ENST00000413033 213 ntBASIC1.78□□□□□ -2.12
HOXC11O43248 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.78□□□□□ -2.12
HOXC11O43248 AC005042.3-201ENST00000453230 174 ntBASIC1.78□□□□□ -2.12
HOXC11O43248 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.78□□□□□ -2.12
HOXC11O43248 AC091021.1-201ENST00000468051 388 ntBASIC1.78□□□□□ -2.12
HOXC11O43248 SNORA31.10-201ENST00000516482 106 ntBASIC1.78□□□□□ -2.12
HOXC11O43248 RNU6-341P-201ENST00000516973 96 ntBASIC1.78□□□□□ -2.12
HOXC11O43248 MIR502-201ENST00000606349 86 ntBASIC1.78□□□□□ -2.12
HOXC11O43248 AC011373.1-201ENST00000607270 237 ntBASIC1.78□□□□□ -2.12
HOXC11O43248 AL021879.1-201ENST00000611756 288 ntBASIC1.78□□□□□ -2.12
HOXC11O43248 AC095038.3-201ENST00000634439 195 ntBASIC1.78□□□□□ -2.12
HOXC11O43248 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
HOXC11O43248 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.77□□□□□ -2.13
HOXC11O43248 Y_RNA.31-201ENST00000362574 102 ntBASIC1.77□□□□□ -2.13
HOXC11O43248 RNU6-457P-201ENST00000363999 107 ntBASIC1.77□□□□□ -2.13
HOXC11O43248 RNU6-338P-201ENST00000383888 105 ntBASIC1.77□□□□□ -2.13
HOXC11O43248 RNU6-136P-201ENST00000384663 107 ntBASIC1.77□□□□□ -2.13
HOXC11O43248 Y_RNA.570-201ENST00000384750 101 ntBASIC1.77□□□□□ -2.13
HOXC11O43248 SNORA67.5-201ENST00000391036 107 ntBASIC1.77□□□□□ -2.13
HOXC11O43248 MTCO2P12-201ENST00000427426 682 ntBASIC1.77□□□□□ -2.13
HOXC11O43248 HSPE1P13-201ENST00000451143 297 ntBASIC1.77□□□□□ -2.13
HOXC11O43248 RNU6-970P-201ENST00000516312 107 ntBASIC1.77□□□□□ -2.13
HOXC11O43248 RNU7-110P-201ENST00000516891 62 ntBASIC1.77□□□□□ -2.13
HOXC11O43248 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.77□□□□□ -2.13
HOXC11O43248 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.77□□□□□ -2.13
HOXC11O43248 AC134503.1-201ENST00000633048 54 ntBASIC1.77□□□□□ -2.13
HOXC11O43248 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
HOXC11O43248 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.77□□□□□ -2.13
HOXC11O43248 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
HOXC11O43248 RNU6-1123P-201ENST00000362347 106 ntBASIC1.76□□□□□ -2.13
HOXC11O43248 Y_RNA.28-201ENST00000362554 111 ntBASIC1.76□□□□□ -2.13
HOXC11O43248 RNU4-13P-201ENST00000364019 141 ntBASIC1.76□□□□□ -2.13
HOXC11O43248 Y_RNA.331-201ENST00000365267 102 ntBASIC1.76□□□□□ -2.13
HOXC11O43248 Y_RNA.361-201ENST00000365515 120 ntBASIC1.76□□□□□ -2.13
HOXC11O43248 STAG3L5P-204ENST00000443759 179 ntBASIC1.76□□□□□ -2.13
HOXC11O43248 AC233266.1-201ENST00000454518 96 ntBASIC1.76□□□□□ -2.13
HOXC11O43248 RNU6-1337P-201ENST00000516525 95 ntBASIC1.76□□□□□ -2.13
HOXC11O43248 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.76□□□□□ -2.13
HOXC11O43248 AP002004.2-201ENST00000531656 154 ntBASIC1.76□□□□□ -2.13
HOXC11O43248 AC124312.5-201ENST00000604451 268 ntBASIC1.76□□□□□ -2.13
HOXC11O43248 AC242852.1-201ENST00000612151 96 ntBASIC1.76□□□□□ -2.13
HOXC11O43248 AC021506.2-201ENST00000612354 169 ntBASIC1.76□□□□□ -2.13
HOXC11O43248 AC244015.1-201ENST00000622301 99 ntBASIC1.76□□□□□ -2.13
HOXC11O43248 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
HOXC11O43248 Y_RNA.143-201ENST00000363520 106 ntBASIC1.75□□□□□ -2.13
HOXC11O43248 RNU6-117P-201ENST00000365415 107 ntBASIC1.75□□□□□ -2.13
HOXC11O43248 RNU6-474P-201ENST00000384243 107 ntBASIC1.75□□□□□ -2.13
HOXC11O43248 RNU6-21P-201ENST00000384710 107 ntBASIC1.75□□□□□ -2.13
HOXC11O43248 RNU1-78P-201ENST00000391248 165 ntBASIC1.75□□□□□ -2.13
HOXC11O43248 RNU6-101P-201ENST00000410323 104 ntBASIC1.75□□□□□ -2.13
HOXC11O43248 RNU6-1199P-201ENST00000411249 104 ntBASIC1.75□□□□□ -2.13
HOXC11O43248 PMCHL1-202ENST00000423102 261 ntBASIC1.75□□□□□ -2.13
HOXC11O43248 AC024067.1-201ENST00000426199 223 ntBASIC1.75□□□□□ -2.13
HOXC11O43248 PGBD4P5-201ENST00000445958 426 ntBASIC1.75□□□□□ -2.13
HOXC11O43248 AC079140.2-201ENST00000506193 142 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 137.6 ms