Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 Y_RNA.35-201ENST00000362601 101 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 Y_RNA.66-201ENST00000362862 102 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 SNORD46.1-201ENST00000364139 104 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 RNU6-309P-201ENST00000364573 106 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 SNORD116-21-201ENST00000384507 92 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 MIR624-201ENST00000385217 97 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 SNORA11.1-201ENST00000408133 129 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 RNU6-1328P-201ENST00000410938 106 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 MTCO1P44-201ENST00000441935 243 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 AC025750.2-201ENST00000442609 450 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 HMGN2P18-201ENST00000450680 270 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 RN7SL807P-201ENST00000470923 297 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 RNU7-149P-201ENST00000516739 59 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 RNU7-172P-201ENST00000517125 64 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 AC011604.1-201ENST00000545978 196 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 UBL5P2-201ENST00000583788 219 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 AC004832.5-201ENST00000608677 401 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 UCA1.1-201ENST00000620952 75 ntBASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.22□□□□□ -1.89
AP4E1Q9UPM8 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.21□□□□□ -1.89
AP4E1Q9UPM8 RNU6-438P-201ENST00000365561 103 ntBASIC3.21□□□□□ -1.9
AP4E1Q9UPM8 SNORD15B-201ENST00000384714 146 ntBASIC3.21□□□□□ -1.9
AP4E1Q9UPM8 MIR548A3-201ENST00000385297 97 ntBASIC3.21□□□□□ -1.9
AP4E1Q9UPM8 SNORD67-201ENST00000390833 111 ntBASIC3.21□□□□□ -1.9
AP4E1Q9UPM8 MIR891A-201ENST00000401237 79 ntBASIC3.21□□□□□ -1.9
AP4E1Q9UPM8 MICF-203ENST00000432679 129 ntBASIC3.21□□□□□ -1.9
AP4E1Q9UPM8 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.21□□□□□ -1.9
AP4E1Q9UPM8 RN7SL504P-201ENST00000494496 287 ntBASIC3.21□□□□□ -1.9
AP4E1Q9UPM8 RNA5SP490-201ENST00000517141 136 ntBASIC3.21□□□□□ -1.9
AP4E1Q9UPM8 NDUFA5P6-201ENST00000542110 379 ntBASIC3.21□□□□□ -1.9
AP4E1Q9UPM8 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.21□□□□□ -1.9
AP4E1Q9UPM8 MIR4662B-201ENST00000579498 81 ntBASIC3.21□□□□□ -1.9
AP4E1Q9UPM8 MIR4679-1-201ENST00000637619 75 ntBASIC3.21□□□□□ -1.9
AP4E1Q9UPM8 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
AP4E1Q9UPM8 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
AP4E1Q9UPM8 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 Y_RNA.309-201ENST00000365046 111 ntBASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 RNU1-101P-201ENST00000391171 127 ntBASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 SNORA26-201ENST00000391286 122 ntBASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 RNA5SP89-201ENST00000410300 108 ntBASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 AC023449.1-201ENST00000454464 154 ntBASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 Y_RNA.651-201ENST00000459380 103 ntBASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 AP001486.1-201ENST00000463339 476 ntBASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 OR9P1P-201ENST00000496431 281 ntBASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 AC245166.1-201ENST00000521012 253 ntBASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 MIR5004-201ENST00000579078 107 ntBASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 MIR622-201ENST00000638396 96 ntBASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 AL136360.1-201ENST00000503377 1900 ntBASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
AP4E1Q9UPM8 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 SNORD18B-201ENST00000365659 72 ntBASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 Y_RNA.486-201ENST00000384398 107 ntBASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 SNORA46-201ENST00000384762 135 ntBASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 RNA5SP127-201ENST00000411051 133 ntBASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 AC009969.1-201ENST00000438726 172 ntBASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 BX510359.1-201ENST00000456973 237 ntBASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 AC006483.1-201ENST00000487308 313 ntBASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 RN7SKP19-201ENST00000516016 252 ntBASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 RNU6-126P-201ENST00000516685 103 ntBASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 RNU6-856P-201ENST00000516959 98 ntBASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 RNU1-104P-201ENST00000517280 175 ntBASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 Pinc.1-201ENST00000616452 154 ntBASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.19□□□□□ -1.9
AP4E1Q9UPM8 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.18□□□□□ -1.9
AP4E1Q9UPM8 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
AP4E1Q9UPM8 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.18□□□□□ -1.9
AP4E1Q9UPM8 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.18□□□□□ -1.9
AP4E1Q9UPM8 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
AP4E1Q9UPM8 SNORA38.1-201ENST00000364172 131 ntBASIC3.18□□□□□ -1.9
AP4E1Q9UPM8 RNU6-880P-201ENST00000384526 107 ntBASIC3.18□□□□□ -1.9
AP4E1Q9UPM8 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.18□□□□□ -1.9
AP4E1Q9UPM8 UQCRHP3-201ENST00000451503 251 ntBASIC3.18□□□□□ -1.9
AP4E1Q9UPM8 RN7SL20P-201ENST00000488827 297 ntBASIC3.18□□□□□ -1.9
AP4E1Q9UPM8 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.18□□□□□ -1.9
AP4E1Q9UPM8 AL022345.2-201ENST00000606307 135 ntBASIC3.18□□□□□ -1.9
AP4E1Q9UPM8 U6.73-201ENST00000619194 103 ntBASIC3.18□□□□□ -1.9
AP4E1Q9UPM8 UGP2-230ENST00000626380 276 ntTSL 5 BASIC3.18□□□□□ -1.9
AP4E1Q9UPM8 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
AP4E1Q9UPM8 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 AC080128.1-201ENST00000474389 1917 ntBASIC3.17□□□□□ -1.9
AP4E1Q9UPM8 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 193.4 ms