Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RNA5SP496-201ENST00000391240 109 ntBASIC3.56□□□□□ -1.84
CCDC87Q9NVE4 AL606845.1-201ENST00000404881 255 ntBASIC3.56□□□□□ -1.84
CCDC87Q9NVE4 AL135786.1-201ENST00000415892 214 ntBASIC3.56□□□□□ -1.84
CCDC87Q9NVE4 AC010531.2-201ENST00000465012 153 ntBASIC3.56□□□□□ -1.84
CCDC87Q9NVE4 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC87Q9NVE4 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC87Q9NVE4 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC87Q9NVE4 AC090616.3-201ENST00000582184 217 ntBASIC3.56□□□□□ -1.84
CCDC87Q9NVE4 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC87Q9NVE4 AC004832.5-201ENST00000608677 401 ntBASIC3.56□□□□□ -1.84
CCDC87Q9NVE4 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CCDC87Q9NVE4 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC87Q9NVE4 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC87Q9NVE4 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC87Q9NVE4 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
CCDC87Q9NVE4 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
CCDC87Q9NVE4 AL356292.1-201ENST00000283110 373 ntBASIC3.55□□□□□ -1.84
CCDC87Q9NVE4 SNORD21-201ENST00000383953 95 ntBASIC3.55□□□□□ -1.84
CCDC87Q9NVE4 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC87Q9NVE4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC87Q9NVE4 RNU6-437P-201ENST00000459408 95 ntBASIC3.55□□□□□ -1.84
CCDC87Q9NVE4 SNORA4.4-201ENST00000515921 135 ntBASIC3.55□□□□□ -1.84
CCDC87Q9NVE4 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC87Q9NVE4 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
CCDC87Q9NVE4 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 U8.2-201ENST00000363156 134 ntBASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 RNU4-13P-201ENST00000364019 141 ntBASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 RNU6-643P-201ENST00000384018 107 ntBASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 SNORA67.4-201ENST00000384688 142 ntBASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 MIR15B-201ENST00000385045 98 ntBASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 AL512604.1-201ENST00000404812 257 ntBASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 AC123900.1-201ENST00000420390 96 ntBASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 AC010409.1-201ENST00000487382 476 ntBASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 RPL23AP54-201ENST00000495129 419 ntBASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 AC093259.1-201ENST00000509755 300 ntBASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 RNU6-62P-201ENST00000516526 102 ntBASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 RNA5SP380-201ENST00000517190 98 ntBASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 MIR3616-201ENST00000584070 92 ntBASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC87Q9NVE4 RNU6-117P-201ENST00000365415 107 ntBASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 RNU6-959P-201ENST00000384671 107 ntBASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 MIR561-201ENST00000385216 97 ntBASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 MIR513C-201ENST00000401352 84 ntBASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 RNU4-43P-201ENST00000410628 137 ntBASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 RNU6-383P-201ENST00000410864 94 ntBASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 RPL30P13-201ENST00000418873 348 ntBASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 AC003685.2-201ENST00000422795 395 ntBASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 MTCO1P44-201ENST00000441935 243 ntBASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 RPS27P22-201ENST00000478056 241 ntBASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 RNA5SP148-201ENST00000516527 94 ntBASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 AC068657.1-201ENST00000520807 306 ntBASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 AC027419.1-201ENST00000522976 328 ntBASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC87Q9NVE4 MAPK10-362ENST00000641864 4484 ntBASIC3.52□□□□□ -1.85
CCDC87Q9NVE4 Y_RNA.332-201ENST00000365271 113 ntBASIC3.52□□□□□ -1.85
CCDC87Q9NVE4 MIR181A2-201ENST00000384863 110 ntBASIC3.52□□□□□ -1.85
CCDC87Q9NVE4 MIR569-201ENST00000385228 96 ntBASIC3.52□□□□□ -1.85
CCDC87Q9NVE4 MT-TT-201ENST00000387460 66 ntBASIC3.52□□□□□ -1.85
CCDC87Q9NVE4 AC016909.1-201ENST00000415916 166 ntBASIC3.52□□□□□ -1.85
CCDC87Q9NVE4 AL513477.1-202ENST00000417061 214 ntBASIC3.52□□□□□ -1.85
CCDC87Q9NVE4 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC87Q9NVE4 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC87Q9NVE4 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC87Q9NVE4 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC87Q9NVE4 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC87Q9NVE4 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC87Q9NVE4 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC87Q9NVE4 RNA5SP383-201ENST00000362934 120 ntBASIC3.51□□□□□ -1.85
CCDC87Q9NVE4 SNORA72-201ENST00000384339 132 ntBASIC3.51□□□□□ -1.85
CCDC87Q9NVE4 SNORA46-201ENST00000384762 135 ntBASIC3.51□□□□□ -1.85
CCDC87Q9NVE4 Y_RNA.586-201ENST00000391146 98 ntBASIC3.51□□□□□ -1.85
CCDC87Q9NVE4 AC006461.1-201ENST00000412637 326 ntBASIC3.51□□□□□ -1.85
CCDC87Q9NVE4 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC3.51□□□□□ -1.85
CCDC87Q9NVE4 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.51□□□□□ -1.85
CCDC87Q9NVE4 snoU13.15-201ENST00000459407 104 ntBASIC3.51□□□□□ -1.85
CCDC87Q9NVE4 RNU6-426P-201ENST00000516464 97 ntBASIC3.51□□□□□ -1.85
CCDC87Q9NVE4 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC87Q9NVE4 MIR3646-201ENST00000578301 84 ntBASIC3.51□□□□□ -1.85
CCDC87Q9NVE4 SNORA50A-202ENST00000629536 136 ntBASIC3.51□□□□□ -1.85
CCDC87Q9NVE4 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC87Q9NVE4 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC87Q9NVE4 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC87Q9NVE4 RNU6-199P-201ENST00000362954 107 ntBASIC3.5□□□□□ -1.85
CCDC87Q9NVE4 RNU4-11P-201ENST00000365287 132 ntBASIC3.5□□□□□ -1.85
CCDC87Q9NVE4 RNU6-417P-201ENST00000384712 107 ntBASIC3.5□□□□□ -1.85
CCDC87Q9NVE4 RNA5SP511-201ENST00000410487 115 ntBASIC3.5□□□□□ -1.85
CCDC87Q9NVE4 RN7SKP101-201ENST00000411376 320 ntBASIC3.5□□□□□ -1.85
CCDC87Q9NVE4 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC3.5□□□□□ -1.85
CCDC87Q9NVE4 AC096725.1-201ENST00000514266 313 ntBASIC3.5□□□□□ -1.85
CCDC87Q9NVE4 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
CCDC87Q9NVE4 AC015720.1-201ENST00000565251 277 ntBASIC3.5□□□□□ -1.85
CCDC87Q9NVE4 AL355297.2-201ENST00000604792 129 ntBASIC3.5□□□□□ -1.85
CCDC87Q9NVE4 ZNF658B-202ENST00000615961 3375 ntBASIC3.49□□□□□ -1.85
CCDC87Q9NVE4 MIR512-1-201ENST00000384913 84 ntBASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms