Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MTND4P28-201ENST00000426217 387 ntBASIC1.3□□□□□ -2.2
DDX28Q9NUL7 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.3□□□□□ -2.2
DDX28Q9NUL7 AC022493.2-201ENST00000506122 481 ntBASIC1.3□□□□□ -2.2
DDX28Q9NUL7 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.3□□□□□ -2.2
DDX28Q9NUL7 RNA5SP20-201ENST00000515976 84 ntBASIC1.3□□□□□ -2.2
DDX28Q9NUL7 AC019176.1-201ENST00000518519 225 ntBASIC1.3□□□□□ -2.2
DDX28Q9NUL7 RPL21P9-201ENST00000556149 474 ntBASIC1.3□□□□□ -2.2
DDX28Q9NUL7 AC073413.2-201ENST00000604332 360 ntBASIC1.3□□□□□ -2.2
DDX28Q9NUL7 AC040896.1-201ENST00000613819 479 ntBASIC1.3□□□□□ -2.2
DDX28Q9NUL7 AL078604.3-201ENST00000615580 211 ntBASIC1.3□□□□□ -2.2
DDX28Q9NUL7 AC087588.2-201ENST00000617667 426 ntBASIC1.3□□□□□ -2.2
DDX28Q9NUL7 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.3□□□□□ -2.2
DDX28Q9NUL7 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
DDX28Q9NUL7 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
DDX28Q9NUL7 SNORA27.1-201ENST00000362604 124 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 RNU6-60P-201ENST00000364792 103 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 Y_RNA.508-201ENST00000384502 114 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 Y_RNA.592-201ENST00000410274 109 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.29□□□□□ -2.2
DDX28Q9NUL7 RAB28P5-201ENST00000427490 651 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.29□□□□□ -2.2
DDX28Q9NUL7 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.29□□□□□ -2.2
DDX28Q9NUL7 SUMO1P2-201ENST00000452524 304 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 Y_RNA.653-201ENST00000459091 95 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 RNU6-470P-201ENST00000515954 104 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 RNU6-120P-201ENST00000516077 103 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 RNU6-559P-201ENST00000516151 98 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 RNU7-4P-201ENST00000516961 62 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 SNORA31.24-201ENST00000517232 57 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
DDX28Q9NUL7 MIR7111-201ENST00000619751 72 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 MIR6079-201ENST00000635807 62 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 U6.115-201ENST00000636045 103 ntBASIC1.29□□□□□ -2.2
DDX28Q9NUL7 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
DDX28Q9NUL7 ZNF209P-201ENST00000593450 2304 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 Y_RNA.122-201ENST00000363331 96 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 Y_RNA.142-201ENST00000363491 102 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 SNORA7.1-201ENST00000363750 139 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 RNU6-407P-201ENST00000365280 104 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 RNA5SP259-201ENST00000365541 109 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 Y_RNA.390-201ENST00000383932 102 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 RNU6-890P-201ENST00000384121 107 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 MIR562-201ENST00000384894 95 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.28□□□□□ -2.2
DDX28Q9NUL7 AL135790.2-201ENST00000437701 267 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.28□□□□□ -2.2
DDX28Q9NUL7 SUMO2P16-201ENST00000519475 264 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 AC144568.1-201ENST00000520139 137 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 AP002001.1-203ENST00000534002 267 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 AC005828.6-201ENST00000606610 232 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 SNORA28-201ENST00000606769 126 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 AL021879.1-201ENST00000611756 288 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 AC133104.2-201ENST00000615272 193 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 AL157834.3-201ENST00000615543 103 ntBASIC1.28□□□□□ -2.2
DDX28Q9NUL7 RNU4-13P-201ENST00000364019 141 ntBASIC1.27□□□□□ -2.21
DDX28Q9NUL7 RNU6-454P-201ENST00000364292 107 ntBASIC1.27□□□□□ -2.21
DDX28Q9NUL7 RNU6-1283P-201ENST00000365314 105 ntBASIC1.27□□□□□ -2.21
DDX28Q9NUL7 Y_RNA.387-201ENST00000383918 102 ntBASIC1.27□□□□□ -2.21
DDX28Q9NUL7 MIR518E-201ENST00000385252 88 ntBASIC1.27□□□□□ -2.21
DDX28Q9NUL7 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.27□□□□□ -2.21
DDX28Q9NUL7 AC018865.2-201ENST00000423631 129 ntBASIC1.27□□□□□ -2.21
DDX28Q9NUL7 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.27□□□□□ -2.21
DDX28Q9NUL7 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.27□□□□□ -2.21
DDX28Q9NUL7 RPL30P15-201ENST00000457129 321 ntBASIC1.27□□□□□ -2.21
DDX28Q9NUL7 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.27□□□□□ -2.21
DDX28Q9NUL7 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.27□□□□□ -2.21
DDX28Q9NUL7 AC015720.1-201ENST00000565251 277 ntBASIC1.27□□□□□ -2.21
DDX28Q9NUL7 UBE2V2P2-201ENST00000587677 504 ntBASIC1.27□□□□□ -2.21
DDX28Q9NUL7 AL365434.2-201ENST00000607979 234 ntBASIC1.27□□□□□ -2.21
DDX28Q9NUL7 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.27□□□□□ -2.21
DDX28Q9NUL7 AL513423.1-201ENST00000621695 132 ntBASIC1.27□□□□□ -2.21
DDX28Q9NUL7 SNORD114-7-201ENST00000362520 77 ntBASIC1.26□□□□□ -2.21
DDX28Q9NUL7 Y_RNA.224-201ENST00000364308 111 ntBASIC1.26□□□□□ -2.21
DDX28Q9NUL7 Y_RNA.243-201ENST00000364481 109 ntBASIC1.26□□□□□ -2.21
DDX28Q9NUL7 RNU6-1297P-201ENST00000384415 104 ntBASIC1.26□□□□□ -2.21
DDX28Q9NUL7 MIR873-201ENST00000401120 77 ntBASIC1.26□□□□□ -2.21
DDX28Q9NUL7 RNU6-1304P-201ENST00000411374 106 ntBASIC1.26□□□□□ -2.21
DDX28Q9NUL7 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.26□□□□□ -2.21
DDX28Q9NUL7 AL354695.1-201ENST00000427935 228 ntBASIC1.26□□□□□ -2.21
DDX28Q9NUL7 MTCO3P10-201ENST00000455912 772 ntBASIC1.26□□□□□ -2.21
DDX28Q9NUL7 RPL30P7-201ENST00000479312 323 ntBASIC1.26□□□□□ -2.21
DDX28Q9NUL7 RNU6-408P-201ENST00000515910 100 ntBASIC1.26□□□□□ -2.21
DDX28Q9NUL7 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.26□□□□□ -2.21
DDX28Q9NUL7 RAB11AP2-201ENST00000545905 639 ntBASIC1.26□□□□□ -2.21
DDX28Q9NUL7 AL161670.1-201ENST00000554348 137 ntBASIC1.26□□□□□ -2.21
DDX28Q9NUL7 AL645939.4-201ENST00000604495 135 ntBASIC1.26□□□□□ -2.21
DDX28Q9NUL7 AC073349.3-201ENST00000617616 186 ntBASIC1.26□□□□□ -2.21
DDX28Q9NUL7 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.26□□□□□ -2.21
DDX28Q9NUL7 U8.1-201ENST00000362843 134 ntBASIC1.25□□□□□ -2.21
DDX28Q9NUL7 RNU6-939P-201ENST00000384634 107 ntBASIC1.25□□□□□ -2.21
DDX28Q9NUL7 SNORA12.1-201ENST00000390873 148 ntBASIC1.25□□□□□ -2.21
DDX28Q9NUL7 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.25□□□□□ -2.21
DDX28Q9NUL7 AL137792.2-201ENST00000443484 235 ntBASIC1.25□□□□□ -2.21
DDX28Q9NUL7 ELOCP24-201ENST00000456370 334 ntBASIC1.25□□□□□ -2.21
DDX28Q9NUL7 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.25□□□□□ -2.21
DDX28Q9NUL7 RNU6-1278P-201ENST00000516130 107 ntBASIC1.25□□□□□ -2.21
DDX28Q9NUL7 RNU7-28P-201ENST00000516759 62 ntBASIC1.25□□□□□ -2.21
DDX28Q9NUL7 RNU6-341P-201ENST00000516973 96 ntBASIC1.25□□□□□ -2.21
DDX28Q9NUL7 AC091178.2-201ENST00000584401 117 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 130.8 ms