Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC003982.1-202ENST00000469928 248 ntBASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 MIR3605-201ENST00000583214 100 ntBASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 MIR338-201ENST00000636369 67 ntBASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 AC134026.1-201ENST00000623249 2239 ntBASIC2.72□□□□□ -1.97
TRIM39Q9HCM9 RNU1-58P-201ENST00000362413 163 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 SNORA5B-201ENST00000363786 132 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 RNU6-1048P-201ENST00000364054 107 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 RNU6-1164P-201ENST00000364428 107 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 Y_RNA.308-201ENST00000365043 101 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 RNU1-109P-201ENST00000383960 147 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 SNORD116-13-201ENST00000384408 92 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 AL135786.1-201ENST00000415892 214 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 CST2P1-201ENST00000425770 87 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 AL162725.1-201ENST00000435405 301 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 YWHAEP4-201ENST00000505390 198 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 SNORA9.3-201ENST00000516383 129 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 RNU7-115P-201ENST00000516433 55 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 RNU1-142P-201ENST00000516682 145 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 AP002392.1-201ENST00000537692 208 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 POLR3GP1-201ENST00000594073 261 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 AC004792.1-201ENST00000614523 137 ntBASIC2.71□□□□□ -1.98
TRIM39Q9HCM9 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 Y_RNA.172-201ENST00000363765 102 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 RNU6-117P-201ENST00000365415 107 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 SNORA8.3-201ENST00000384679 139 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 AL590004.2-201ENST00000404787 371 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 AC117454.1-201ENST00000491120 168 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 RNA5SP356-201ENST00000515972 94 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 RNU7-99P-201ENST00000516271 62 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 RNU6-63P-201ENST00000516690 95 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 CBX3P4-201ENST00000538909 354 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 MIR5688-201ENST00000580619 83 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 MIR3670-2-201ENST00000582974 65 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 MIR3670-1-201ENST00000584160 65 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 MIR3670-3-201ENST00000584855 65 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 AP003357.1-201ENST00000604497 148 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 MIR3670-4-201ENST00000612260 65 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 Y_RNA.802-201ENST00000614892 130 ntBASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
TRIM39Q9HCM9 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 RNU1-96P-201ENST00000364163 162 ntBASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 RNU4-17P-201ENST00000365598 141 ntBASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 RNA5SP511-201ENST00000410487 115 ntBASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 AC009310.1-201ENST00000414414 451 ntBASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 EBAG9P1-201ENST00000418955 543 ntBASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 AC024995.1-201ENST00000523014 93 ntBASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 AC004486.1-201ENST00000546846 233 ntBASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 MIR3169-201ENST00000578032 83 ntBASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 AC005786.1-201ENST00000588553 154 ntBASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 AC072026.1-201ENST00000605023 201 ntBASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 AC022202.1-201ENST00000613515 211 ntBASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 SCARNA15.3-201ENST00000626315 122 ntBASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 SCARNA4.1-201ENST00000628597 123 ntBASIC2.69□□□□□ -1.98
TRIM39Q9HCM9 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 MIR367-201ENST00000362299 68 ntBASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 RNU6-653P-201ENST00000363074 106 ntBASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 Y_RNA.111-201ENST00000363248 100 ntBASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 U8.7-201ENST00000364940 136 ntBASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 MIR562-201ENST00000384894 95 ntBASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 MIR520G-201ENST00000385064 90 ntBASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 SNORA36B-201ENST00000410438 131 ntBASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 RNA5SP270-201ENST00000411361 118 ntBASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 AC063976.3-201ENST00000426849 329 ntBASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 AC015720.1-201ENST00000565251 277 ntBASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 AC127455.1-201ENST00000565496 145 ntBASIC2.68□□□□□ -1.98
TRIM39Q9HCM9 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
TRIM39Q9HCM9 Y_RNA.270-201ENST00000364693 104 ntBASIC2.67□□□□□ -1.98
TRIM39Q9HCM9 RNU6-923P-201ENST00000364753 107 ntBASIC2.67□□□□□ -1.98
TRIM39Q9HCM9 MT-TR-201ENST00000387439 65 ntBASIC2.67□□□□□ -1.98
TRIM39Q9HCM9 MIR526A2-201ENST00000390198 65 ntBASIC2.67□□□□□ -1.98
TRIM39Q9HCM9 RNA5SP184-201ENST00000411071 108 ntBASIC2.67□□□□□ -1.98
TRIM39Q9HCM9 SNORD109B-201ENST00000458961 67 ntBASIC2.67□□□□□ -1.98
TRIM39Q9HCM9 SNORD109A-201ENST00000459128 67 ntBASIC2.67□□□□□ -1.98
TRIM39Q9HCM9 RNU7-120P-201ENST00000459334 63 ntBASIC2.67□□□□□ -1.98
TRIM39Q9HCM9 RPL23AP54-201ENST00000495129 419 ntBASIC2.67□□□□□ -1.98
TRIM39Q9HCM9 AC100767.1-201ENST00000528178 123 ntBASIC2.67□□□□□ -1.98
TRIM39Q9HCM9 MIR4724-201ENST00000579485 89 ntBASIC2.67□□□□□ -1.98
TRIM39Q9HCM9 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.67□□□□□ -1.98
TRIM39Q9HCM9 AC073413.2-201ENST00000604332 360 ntBASIC2.67□□□□□ -1.98
TRIM39Q9HCM9 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.67□□□□□ -1.98
TRIM39Q9HCM9 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.66□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms