Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RNU1-148P-201ENST00000384472 162 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 SNORA8.3-201ENST00000384679 139 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 RPL30P13-201ENST00000418873 348 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 AL139132.1-201ENST00000431587 344 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 HMGN2P18-201ENST00000450680 270 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 ATP5EP1-201ENST00000510257 156 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 AC107027.2-201ENST00000512197 115 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 RNA5SP367-201ENST00000516557 118 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 RNU6-107P-201ENST00000516643 102 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 RNU6-1234P-201ENST00000516877 103 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 SNORD11B-201ENST00000607707 90 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 AC008873.1-201ENST00000625051 138 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 AC108206.1-201ENST00000570186 4159 ntBASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
CLIP3Q96DZ5 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 AC073325.2-201ENST00000339545 159 ntBASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 Y_RNA.24-201ENST00000362508 103 ntBASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 RNU1-91P-201ENST00000364746 163 ntBASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 SNORD31B-201ENST00000364977 69 ntBASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 Y_RNA.510-201ENST00000384511 114 ntBASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 Y_RNA.542-201ENST00000384641 111 ntBASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 SNORA46-201ENST00000384762 135 ntBASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 MIR616-201ENST00000385293 97 ntBASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 MIR300-201ENST00000401138 83 ntBASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 SRIP3-201ENST00000413200 219 ntBASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 AL035461.1-201ENST00000421490 332 ntBASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 AC074290.1-201ENST00000448883 135 ntBASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 UQCRHP3-201ENST00000451503 251 ntBASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 RNU6-826P-201ENST00000516827 104 ntBASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.79□□□□□ -1.96
CLIP3Q96DZ5 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 RNU6-438P-201ENST00000365561 103 ntBASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 Y_RNA.420-201ENST00000384043 110 ntBASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 Y_RNA.500-201ENST00000384466 111 ntBASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 AC093259.1-201ENST00000509755 300 ntBASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 RNU6-991P-201ENST00000516168 107 ntBASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 RNU6-919P-201ENST00000516731 104 ntBASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 AC004486.1-201ENST00000546846 233 ntBASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 GTF3AP2-201ENST00000557014 266 ntBASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 MIR3126-201ENST00000577443 74 ntBASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 AC026271.5-201ENST00000577873 130 ntBASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 ELOCP29-201ENST00000588193 334 ntBASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 AL033523.1-201ENST00000605153 153 ntBASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 Y_RNA.802-201ENST00000614892 130 ntBASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 U6.115-201ENST00000636045 103 ntBASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.78□□□□□ -1.96
CLIP3Q96DZ5 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 RNU6-153P-201ENST00000364422 104 ntBASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 Y_RNA.293-201ENST00000364908 93 ntBASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 RNU6-969P-201ENST00000383900 105 ntBASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 RNU6-376P-201ENST00000384731 106 ntBASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 MIR526A2-201ENST00000390198 65 ntBASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 MIR513C-201ENST00000401352 84 ntBASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 AL135938.1-201ENST00000443141 297 ntBASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 RNU7-141P-201ENST00000459304 62 ntBASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 UBE2DNL-203ENST00000474922 222 ntBASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 RN7SL633P-201ENST00000488974 297 ntBASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 PRELID2P1-201ENST00000552837 301 ntBASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 AL359881.1-201ENST00000602916 267 ntBASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 AL391903.3-201ENST00000612158 163 ntBASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CLIP3Q96DZ5 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 RNY1P11-201ENST00000363759 113 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 RNU6-1325P-201ENST00000364905 105 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 Y_RNA.456-201ENST00000384232 111 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 MT-TT-201ENST00000387460 66 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 MIR1283-1-201ENST00000408494 87 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 RNU6-710P-201ENST00000410424 105 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 EDDM3CP-201ENST00000415977 425 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 TOMM22P2-201ENST00000430735 237 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 AC087499.2-201ENST00000432861 149 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 AC245047.8-201ENST00000456455 284 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 AC016925.1-201ENST00000458303 298 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 RNU6-1211P-201ENST00000459179 105 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 AC092991.1-201ENST00000477176 376 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 RNU6-561P-201ENST00000516222 102 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 RNU6-1007P-201ENST00000516586 107 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 RNU1-117P-201ENST00000517041 158 ntBASIC2.76□□□□□ -1.97
CLIP3Q96DZ5 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 ZNF702P-202ENST00000434269 1966 ntBASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 SNORA25.6-201ENST00000364121 118 ntBASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 Y_RNA.332-201ENST00000365271 113 ntBASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 Y_RNA.337-201ENST00000365312 102 ntBASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 MIR539-201ENST00000365690 78 ntBASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 MIR586-201ENST00000385035 97 ntBASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 SNORA11.2-201ENST00000408318 127 ntBASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 RNU6-855P-201ENST00000410395 104 ntBASIC2.75□□□□□ -1.97
CLIP3Q96DZ5 AC105272.1-201ENST00000438604 198 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 174.8 ms