Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SNORD37.2-201ENST00000391075 66 ntBASIC2.8□□□□□ -1.96
USP39Q53GS9 RNA5SP21-201ENST00000410917 96 ntBASIC2.8□□□□□ -1.96
USP39Q53GS9 AL121890.1-201ENST00000435457 205 ntBASIC2.8□□□□□ -1.96
USP39Q53GS9 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.8□□□□□ -1.96
USP39Q53GS9 YWHAEP4-201ENST00000505390 198 ntBASIC2.8□□□□□ -1.96
USP39Q53GS9 AC096725.1-201ENST00000514266 313 ntBASIC2.8□□□□□ -1.96
USP39Q53GS9 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.8□□□□□ -1.96
USP39Q53GS9 AC090115.4-201ENST00000609970 188 ntBASIC2.8□□□□□ -1.96
USP39Q53GS9 AL590808.1-201ENST00000618696 141 ntBASIC2.8□□□□□ -1.96
USP39Q53GS9 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
USP39Q53GS9 AL391516.1-201ENST00000554380 2449 ntBASIC2.8□□□□□ -1.96
USP39Q53GS9 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.8□□□□□ -1.96
USP39Q53GS9 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.79□□□□□ -1.96
USP39Q53GS9 AC010889.1-201ENST00000566193 2666 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 RNA5SP432-201ENST00000362480 116 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 RNA5SP68-201ENST00000363885 119 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 RNU1-112P-201ENST00000364401 164 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 SNORA68.1-201ENST00000364537 132 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 RNU6-144P-201ENST00000383951 107 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 SNORA12-201ENST00000391162 147 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 MIR1278-201ENST00000408753 81 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 RNU6-588P-201ENST00000410281 105 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 RNU6-383P-201ENST00000410864 94 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 RNU7-107P-201ENST00000459121 61 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.79□□□□□ -1.96
USP39Q53GS9 AC008413.1-201ENST00000511864 177 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.79□□□□□ -1.96
USP39Q53GS9 AC025281.1-201ENST00000567026 265 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 MIR4724-201ENST00000579485 89 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 AC011603.4-201ENST00000611325 277 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 MIR6817-201ENST00000615588 66 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 MIR6844-201ENST00000637122 62 ntBASIC2.79□□□□□ -1.96
USP39Q53GS9 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.79□□□□□ -1.96
USP39Q53GS9 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
USP39Q53GS9 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
USP39Q53GS9 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
USP39Q53GS9 RNU6-1298P-201ENST00000362456 101 ntBASIC2.78□□□□□ -1.96
USP39Q53GS9 Y_RNA.124-201ENST00000363339 93 ntBASIC2.78□□□□□ -1.96
USP39Q53GS9 RNU6-1210P-201ENST00000363775 107 ntBASIC2.78□□□□□ -1.96
USP39Q53GS9 SNORA70B-201ENST00000384210 135 ntBASIC2.78□□□□□ -1.96
USP39Q53GS9 RNY4P18-201ENST00000391107 89 ntBASIC2.78□□□□□ -1.96
USP39Q53GS9 AL590004.2-201ENST00000404787 371 ntBASIC2.78□□□□□ -1.96
USP39Q53GS9 RNU4-43P-201ENST00000410628 137 ntBASIC2.78□□□□□ -1.96
USP39Q53GS9 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.78□□□□□ -1.96
USP39Q53GS9 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.78□□□□□ -1.96
USP39Q53GS9 AC069528.2-201ENST00000624849 1991 ntBASIC2.78□□□□□ -1.97
USP39Q53GS9 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.77□□□□□ -1.97
USP39Q53GS9 MAPK10-266ENST00000641066 6555 ntBASIC2.77□□□□□ -1.97
USP39Q53GS9 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
USP39Q53GS9 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
USP39Q53GS9 SNORA63.4-201ENST00000362763 126 ntBASIC2.77□□□□□ -1.97
USP39Q53GS9 RNU6-728P-201ENST00000365375 104 ntBASIC2.77□□□□□ -1.97
USP39Q53GS9 Y_RNA.393-201ENST00000383936 102 ntBASIC2.77□□□□□ -1.97
USP39Q53GS9 RNU6-1056P-201ENST00000383996 107 ntBASIC2.77□□□□□ -1.97
USP39Q53GS9 MIR181A2-201ENST00000384863 110 ntBASIC2.77□□□□□ -1.97
USP39Q53GS9 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.77□□□□□ -1.97
USP39Q53GS9 HSPE1P13-201ENST00000451143 297 ntBASIC2.77□□□□□ -1.97
USP39Q53GS9 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.77□□□□□ -1.97
USP39Q53GS9 AC117454.1-201ENST00000491120 168 ntBASIC2.77□□□□□ -1.97
USP39Q53GS9 PDCD5P2-201ENST00000507570 312 ntBASIC2.77□□□□□ -1.97
USP39Q53GS9 MRPS36P2-201ENST00000512569 299 ntBASIC2.77□□□□□ -1.97
USP39Q53GS9 RNU7-115P-201ENST00000516433 55 ntBASIC2.77□□□□□ -1.97
USP39Q53GS9 RNU2-56P-201ENST00000516826 190 ntBASIC2.77□□□□□ -1.97
USP39Q53GS9 AP001328.1-201ENST00000528550 176 ntBASIC2.77□□□□□ -1.97
USP39Q53GS9 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.77□□□□□ -1.97
USP39Q53GS9 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.77□□□□□ -1.97
USP39Q53GS9 CENPCP1-201ENST00000533085 2578 ntBASIC2.77□□□□□ -1.97
USP39Q53GS9 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
USP39Q53GS9 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
USP39Q53GS9 MIR367-201ENST00000362299 68 ntBASIC2.76□□□□□ -1.97
USP39Q53GS9 snoU2_19.1-201ENST00000362361 80 ntBASIC2.76□□□□□ -1.97
USP39Q53GS9 SNORD114-7-201ENST00000362520 77 ntBASIC2.76□□□□□ -1.97
USP39Q53GS9 RNU6-655P-201ENST00000362858 107 ntBASIC2.76□□□□□ -1.97
USP39Q53GS9 RNU6-461P-201ENST00000364195 107 ntBASIC2.76□□□□□ -1.97
USP39Q53GS9 RNU6-1082P-201ENST00000364574 107 ntBASIC2.76□□□□□ -1.97
USP39Q53GS9 SNORD116-13-201ENST00000384408 92 ntBASIC2.76□□□□□ -1.97
USP39Q53GS9 MIR586-201ENST00000385035 97 ntBASIC2.76□□□□□ -1.97
USP39Q53GS9 RNU6-750P-201ENST00000390946 107 ntBASIC2.76□□□□□ -1.97
USP39Q53GS9 AL355796.1-201ENST00000406706 323 ntBASIC2.76□□□□□ -1.97
USP39Q53GS9 MIR1185-2-201ENST00000408687 86 ntBASIC2.76□□□□□ -1.97
USP39Q53GS9 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.76□□□□□ -1.97
USP39Q53GS9 HSPE1P18-201ENST00000517602 280 ntBASIC2.76□□□□□ -1.97
USP39Q53GS9 MIR3616-201ENST00000584070 92 ntBASIC2.76□□□□□ -1.97
USP39Q53GS9 U7.2-201ENST00000607576 63 ntBASIC2.76□□□□□ -1.97
USP39Q53GS9 MIR548AY-201ENST00000617669 107 ntBASIC2.76□□□□□ -1.97
USP39Q53GS9 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.76□□□□□ -1.97
USP39Q53GS9 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
USP39Q53GS9 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
USP39Q53GS9 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
USP39Q53GS9 RNU6-915P-201ENST00000364943 103 ntBASIC2.75□□□□□ -1.97
USP39Q53GS9 RNU1-57P-201ENST00000384491 166 ntBASIC2.75□□□□□ -1.97
USP39Q53GS9 MIR512-1-201ENST00000384913 84 ntBASIC2.75□□□□□ -1.97
USP39Q53GS9 SNORA36B-201ENST00000410438 131 ntBASIC2.75□□□□□ -1.97
USP39Q53GS9 RNU6-1064P-201ENST00000410626 104 ntBASIC2.75□□□□□ -1.97
USP39Q53GS9 RNA5SP344-201ENST00000411081 104 ntBASIC2.75□□□□□ -1.97
USP39Q53GS9 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.75□□□□□ -1.97
USP39Q53GS9 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
USP39Q53GS9 CYCSP49-201ENST00000420810 319 ntBASIC2.75□□□□□ -1.97
USP39Q53GS9 RPL23AP7-203ENST00000449021 469 ntBASIC2.75□□□□□ -1.97
USP39Q53GS9 RPS27P1-201ENST00000450552 247 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms