| WNT3 | P56703 | SNORD116-13-201 | ENST00000384408 | 92 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RNU6-376P-201 | ENST00000384731 | 106 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RNU6-763P-201 | ENST00000390865 | 106 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RNA5SP323-201 | ENST00000391094 | 133 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RNA5SP467-201 | ENST00000391274 | 118 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT3 | P56703 | FO680682.1-201 | ENST00000421261 | 345 nt | TSL 3 BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT3 | P56703 | TRBV12-1-201 | ENST00000479785 | 344 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RPS29P21-201 | ENST00000496272 | 170 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT3 | P56703 | TRAPPC2P7-201 | ENST00000509650 | 231 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RNA5SP402-201 | ENST00000517148 | 110 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AP001001.1-201 | ENST00000532422 | 826 nt | TSL 3 BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT3 | P56703 | snoU18.1-201 | ENST00000629629 | 71 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT3 | P56703 | MIR338-201 | ENST00000636369 | 67 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT3 | P56703 | CEP57-213 | ENST00000541150 | 2911 nt | APPRIS ALT2 TSL 5 BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AC003984.1-201 | ENST00000450977 | 4104 nt | TSL 1 (best) BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | SNORD114-7-201 | ENST00000362520 | 77 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RNU6-1272P-201 | ENST00000362776 | 107 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | Y_RNA.217-201 | ENST00000364214 | 105 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | Y_RNA.257-201 | ENST00000364596 | 102 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | Y_RNA.456-201 | ENST00000384232 | 111 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | MTCO2P33-201 | ENST00000402100 | 465 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RNU6-847P-201 | ENST00000411115 | 108 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AC010154.1-201 | ENST00000425857 | 269 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | Y_RNA.641-201 | ENST00000459414 | 105 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AC097462.1-201 | ENST00000514125 | 324 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RNU6-1278P-201 | ENST00000516130 | 107 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AC136628.3-201 | ENST00000521868 | 290 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | DISC1FP1-204 | ENST00000563681 | 466 nt | TSL 3 BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AC067747.1-201 | ENST00000608026 | 250 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | U91328.3-201 | ENST00000608931 | 354 nt | TSL 3 BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AC245884.12-201 | ENST00000615364 | 59 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | U6.73-201 | ENST00000619194 | 103 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | 5S_rRNA.13-201 | ENST00000622298 | 123 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | FO624990.1-201 | ENST00000636373 | 85 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AC068647.2-201 | ENST00000637380 | 353 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AC016717.2-201 | ENST00000609089 | 5141 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | CEP57L1-216 | ENST00000521522 | 2259 nt | TSL 5 BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | CHD9-202 | ENST00000398510 | 11337 nt | TSL 1 (best) BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | Z82195.2-201 | ENST00000612348 | 18351 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT3 | P56703 | CCPG1-203 | ENST00000442196 | 3453 nt | APPRIS P1 TSL 2 BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | OSTN-201 | ENST00000339051 | 402 nt | APPRIS P1 TSL 1 (best) BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | Y_RNA.76-201 | ENST00000362931 | 109 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RNU1-22P-201 | ENST00000363334 | 158 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | SNORA33-201 | ENST00000363664 | 130 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RNU4-13P-201 | ENST00000364019 | 141 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RNU6-801P-201 | ENST00000364087 | 105 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RNU1-96P-201 | ENST00000364163 | 162 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | Y_RNA.310-201 | ENST00000365063 | 113 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RNU1-51P-201 | ENST00000365345 | 176 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | Y_RNA.368-201 | ENST00000365547 | 113 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | LINC00583-201 | ENST00000381010 | 387 nt | TSL 2 BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | MIR518A2-201 | ENST00000384966 | 87 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | SNORA40.19-201 | ENST00000390846 | 128 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | SNORA26.5-201 | ENST00000391215 | 123 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AL592431.2-201 | ENST00000422198 | 171 nt | TSL 3 BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | OOSP1P1-201 | ENST00000423265 | 274 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AC108059.2-201 | ENST00000434626 | 151 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | HSPE1P13-201 | ENST00000451143 | 297 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RPS20P10-201 | ENST00000451209 | 253 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | SNORD116-28-201 | ENST00000516123 | 91 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | RNU4-71P-201 | ENST00000516258 | 113 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AC007229.1-201 | ENST00000590455 | 412 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AL049779.4-201 | ENST00000604500 | 156 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AC141273.2-201 | ENST00000618989 | 130 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AC023490.3-201 | ENST00000621762 | 358 nt | TSL 3 BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | COMMD6-213 | ENST00000626103 | 120 nt | TSL 5 BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | AP000550.4-201 | ENST00000639507 | 358 nt | TSL 3 BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | SERPINI2-207 | ENST00000476257 | 1837 nt | APPRIS P1 TSL 5 BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | IDE-201 | ENST00000265986 | 5877 nt | APPRIS P1 TSL 1 (best) BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT3 | P56703 | Y_RNA.122-201 | ENST00000363331 | 96 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | RNU6-211P-201 | ENST00000384047 | 107 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | SNORA72.4-201 | ENST00000384174 | 132 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | HMGN2P39-201 | ENST00000398005 | 273 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | AL359511.1-201 | ENST00000402970 | 211 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | RNU2-14P-201 | ENST00000411053 | 191 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | MAMDC2-AS1-203 | ENST00000420573 | 339 nt | TSL 3 BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | RPS15AP28-201 | ENST00000435088 | 386 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | U8.19-201 | ENST00000459095 | 133 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | RNU7-193P-201 | ENST00000516723 | 65 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | AC073413.2-201 | ENST00000604332 | 360 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | AC004832.4-201 | ENST00000608952 | 331 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | AL008718.3-201 | ENST00000610217 | 321 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | AL353149.1-201 | ENST00000610667 | 244 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | AL359075.3-201 | ENST00000613288 | 217 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | 5S_rRNA.11-201 | ENST00000618635 | 84 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | U4.3-201 | ENST00000621047 | 82 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | AGL-204 | ENST00000370161 | 6923 nt | TSL 5 BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | VPS54-202 | ENST00000354504 | 3594 nt | TSL 1 (best) BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT3 | P56703 | RTL4-201 | ENST00000340433 | 2613 nt | APPRIS P1 BASIC | 2.26 | □□□□□ -2.05 | | |
| WNT3 | P56703 | ZBTB6-201 | ENST00000373659 | 4106 nt | APPRIS P1 TSL 1 (best) BASIC | 2.26 | □□□□□ -2.05 | | |
| WNT3 | P56703 | FABP12-201 | ENST00000360464 | 551 nt | APPRIS P1 TSL 1 (best) BASIC | 2.26 | □□□□□ -2.05 | | |
| WNT3 | P56703 | RNU1-138P-201 | ENST00000384093 | 164 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| WNT3 | P56703 | SNORA8-201 | ENST00000384574 | 139 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| WNT3 | P56703 | SNORA67.4-201 | ENST00000384688 | 142 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| WNT3 | P56703 | RNA5SP511-201 | ENST00000410487 | 115 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| WNT3 | P56703 | EBAG9P1-201 | ENST00000418955 | 543 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| WNT3 | P56703 | LINC02532-205 | ENST00000430094 | 628 nt | TSL 5 BASIC | 2.26 | □□□□□ -2.05 | | |
| WNT3 | P56703 | HMGN2P3-201 | ENST00000433603 | 273 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| WNT3 | P56703 | HMGN2P5-201 | ENST00000436882 | 273 nt | BASIC | 2.26 | □□□□□ -2.05 | | |
| WNT3 | P56703 | Y_RNA.637-201 | ENST00000459424 | 114 nt | BASIC | 2.26 | □□□□□ -2.05 | | |