Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 RNU6-130P-201ENST00000411112 103 ntBASIC1.96□□□□□ -2.1
SHMT1P34896 HMGN2P34-201ENST00000437647 269 ntBASIC1.96□□□□□ -2.1
SHMT1P34896 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.96□□□□□ -2.1
SHMT1P34896 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
SHMT1P34896 RNU2-12P-201ENST00000517216 168 ntBASIC1.96□□□□□ -2.1
SHMT1P34896 AC055872.1-201ENST00000570978 278 ntBASIC1.96□□□□□ -2.1
SHMT1P34896 MIR4423-201ENST00000580922 80 ntBASIC1.96□□□□□ -2.1
SHMT1P34896 AL096840.1-201ENST00000603287 93 ntBASIC1.96□□□□□ -2.1
SHMT1P34896 U6.115-201ENST00000636045 103 ntBASIC1.96□□□□□ -2.1
SHMT1P34896 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
SHMT1P34896 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
SHMT1P34896 RNU6-862P-201ENST00000362804 105 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 Y_RNA.243-201ENST00000364481 109 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 RNU6-1175P-201ENST00000365200 107 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 MIR515-2-201ENST00000384883 83 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 MIR515-1-201ENST00000384884 83 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 SNORA48.1-201ENST00000390879 135 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 SNORA67.5-201ENST00000391036 107 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 AL512604.1-201ENST00000404812 257 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 RPL23AP36-201ENST00000413895 458 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.95□□□□□ -2.1
SHMT1P34896 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
SHMT1P34896 BTF3P4-201ENST00000418852 495 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 HMGN2P19-201ENST00000425149 265 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 CST2P1-201ENST00000425770 87 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.95□□□□□ -2.1
SHMT1P34896 MRPS17P9-201ENST00000511924 393 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 RNU6-397P-201ENST00000516226 104 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 SNORA40.15-201ENST00000516884 107 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 RNU6-897P-201ENST00000517135 105 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.95□□□□□ -2.1
SHMT1P34896 AL137100.2-201ENST00000555786 315 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 AC005034.5-201ENST00000604219 466 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 AC012493.3-201ENST00000604494 112 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 RAC1P9-201ENST00000604990 392 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 AL353621.2-201ENST00000605340 133 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 AC022441.3-201ENST00000605737 136 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 AC011373.1-201ENST00000607270 237 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.95□□□□□ -2.1
SHMT1P34896 AC022513.1-201ENST00000624512 117 ntBASIC1.95□□□□□ -2.1
SHMT1P34896 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
SHMT1P34896 SNORD114-7-201ENST00000362520 77 ntBASIC1.94□□□□□ -2.1
SHMT1P34896 Y_RNA.101-201ENST00000363154 102 ntBASIC1.94□□□□□ -2.1
SHMT1P34896 RNU6-271P-201ENST00000363858 105 ntBASIC1.94□□□□□ -2.1
SHMT1P34896 RNU1-96P-201ENST00000364163 162 ntBASIC1.94□□□□□ -2.1
SHMT1P34896 Y_RNA.276-201ENST00000364732 109 ntBASIC1.94□□□□□ -2.1
SHMT1P34896 RNU6-417P-201ENST00000384712 107 ntBASIC1.94□□□□□ -2.1
SHMT1P34896 AL117342.1-201ENST00000404861 406 ntBASIC1.94□□□□□ -2.1
SHMT1P34896 RNA5SP501-201ENST00000410990 112 ntBASIC1.94□□□□□ -2.1
SHMT1P34896 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.94□□□□□ -2.1
SHMT1P34896 RNA5SP364-201ENST00000516938 78 ntBASIC1.94□□□□□ -2.1
SHMT1P34896 AC131281.1-201ENST00000522984 164 ntBASIC1.94□□□□□ -2.1
SHMT1P34896 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.94□□□□□ -2.1
SHMT1P34896 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.94□□□□□ -2.1
SHMT1P34896 MIR4498-201ENST00000577599 66 ntBASIC1.94□□□□□ -2.1
SHMT1P34896 MIR3618-201ENST00000580330 88 ntBASIC1.94□□□□□ -2.1
SHMT1P34896 AC005828.6-201ENST00000606610 232 ntBASIC1.94□□□□□ -2.1
SHMT1P34896 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
SHMT1P34896 Y_RNA.145-201ENST00000363527 102 ntBASIC1.93□□□□□ -2.1
SHMT1P34896 Y_RNA.153-201ENST00000363615 91 ntBASIC1.93□□□□□ -2.1
SHMT1P34896 Y_RNA.287-201ENST00000364853 94 ntBASIC1.93□□□□□ -2.1
SHMT1P34896 Y_RNA.446-201ENST00000384178 104 ntBASIC1.93□□□□□ -2.1
SHMT1P34896 SNORA20B-201ENST00000384220 132 ntBASIC1.93□□□□□ -2.1
SHMT1P34896 RNU6-937P-201ENST00000384325 106 ntBASIC1.93□□□□□ -2.1
SHMT1P34896 AC113618.1-201ENST00000416747 285 ntBASIC1.93□□□□□ -2.1
SHMT1P34896 AC099677.2-201ENST00000436385 175 ntBASIC1.93□□□□□ -2.1
SHMT1P34896 AC005042.3-201ENST00000453230 174 ntBASIC1.93□□□□□ -2.1
SHMT1P34896 RNU6-1143P-201ENST00000516125 104 ntBASIC1.93□□□□□ -2.1
SHMT1P34896 Y_RNA.720-201ENST00000517166 92 ntBASIC1.93□□□□□ -2.1
SHMT1P34896 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.93□□□□□ -2.1
SHMT1P34896 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.93□□□□□ -2.1
SHMT1P34896 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
SHMT1P34896 ZNF702P-202ENST00000434269 1966 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 MIR378A-201ENST00000362177 66 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 RNU6-770P-201ENST00000363929 105 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 Y_RNA.210-201ENST00000364161 110 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 SNORA63C-201ENST00000364578 129 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 Y_RNA.338-201ENST00000365320 114 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 RNU6-738P-201ENST00000384531 106 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 AL355796.1-201ENST00000406706 323 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 AP1B1P2-201ENST00000416196 106 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 AC096920.1-201ENST00000423991 241 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 RNVU1-2-201ENST00000516326 135 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 RNU6-155P-201ENST00000516347 100 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 RNU6-1046P-201ENST00000516538 107 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 RNU7-110P-201ENST00000516891 62 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.92□□□□□ -2.1
SHMT1P34896 AC069114.2-201ENST00000604699 304 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 MIR376A1-201ENST00000616574 68 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.92□□□□□ -2.1
SHMT1P34896 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
SHMT1P34896 SNORA27.1-201ENST00000362604 124 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 SNORD115-30-201ENST00000364117 82 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 Y_RNA.214-201ENST00000364201 112 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 RNU6-21P-201ENST00000384710 107 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 MIR873-201ENST00000401120 77 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 RNU6-1199P-201ENST00000411249 104 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 AC010154.1-201ENST00000425857 269 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 RPS27P22-201ENST00000478056 241 ntBASIC1.91□□□□□ -2.1
SHMT1P34896 AC010655.3-201ENST00000478818 450 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 124.1 ms