Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 RNU6-62P-201ENST00000516526 102 ntBASIC3.6□□□□□ -1.83
RFX1P22670 RNU7-128P-201ENST00000517247 62 ntBASIC3.6□□□□□ -1.83
RFX1P22670 IGKV2-26-201ENST00000518305 343 ntBASIC3.6□□□□□ -1.83
RFX1P22670 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.6□□□□□ -1.83
RFX1P22670 AC091178.2-201ENST00000584401 117 ntBASIC3.6□□□□□ -1.83
RFX1P22670 AL049861.1-201ENST00000603130 150 ntBASIC3.6□□□□□ -1.83
RFX1P22670 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.59□□□□□ -1.83
RFX1P22670 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
RFX1P22670 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.59□□□□□ -1.83
RFX1P22670 RNU6-805P-201ENST00000365643 106 ntBASIC3.59□□□□□ -1.83
RFX1P22670 DYNLT3P1-201ENST00000378574 347 ntBASIC3.59□□□□□ -1.83
RFX1P22670 RNU6-1072P-201ENST00000384703 107 ntBASIC3.59□□□□□ -1.83
RFX1P22670 RNU6-443P-201ENST00000384780 107 ntBASIC3.59□□□□□ -1.83
RFX1P22670 MIR1262-201ENST00000408276 93 ntBASIC3.59□□□□□ -1.83
RFX1P22670 RNU6-1186P-201ENST00000410429 97 ntBASIC3.59□□□□□ -1.83
RFX1P22670 AC104389.3-201ENST00000445629 235 ntBASIC3.59□□□□□ -1.83
RFX1P22670 AC023449.1-201ENST00000454464 154 ntBASIC3.59□□□□□ -1.83
RFX1P22670 AL358944.1-201ENST00000528537 144 ntBASIC3.59□□□□□ -1.83
RFX1P22670 AC007536.1-201ENST00000533382 349 ntBASIC3.59□□□□□ -1.83
RFX1P22670 RPL23AP91-201ENST00000569211 455 ntBASIC3.59□□□□□ -1.83
RFX1P22670 MIR378D2-201ENST00000580636 98 ntBASIC3.59□□□□□ -1.83
RFX1P22670 MIR7106-201ENST00000612419 65 ntBASIC3.59□□□□□ -1.83
RFX1P22670 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.59□□□□□ -1.83
RFX1P22670 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
RFX1P22670 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
RFX1P22670 SNORA5B-201ENST00000363786 132 ntBASIC3.58□□□□□ -1.84
RFX1P22670 Y_RNA.796-201ENST00000364268 102 ntBASIC3.58□□□□□ -1.84
RFX1P22670 RNU6-1180P-201ENST00000364935 107 ntBASIC3.58□□□□□ -1.84
RFX1P22670 Y_RNA.799-201ENST00000364992 102 ntBASIC3.58□□□□□ -1.84
RFX1P22670 MIR562-201ENST00000384894 95 ntBASIC3.58□□□□□ -1.84
RFX1P22670 AL117342.1-201ENST00000404861 406 ntBASIC3.58□□□□□ -1.84
RFX1P22670 MTND4LP9-201ENST00000427694 174 ntBASIC3.58□□□□□ -1.84
RFX1P22670 ATP5J2P3-201ENST00000451550 258 ntBASIC3.58□□□□□ -1.84
RFX1P22670 RNU7-197P-201ENST00000458836 62 ntBASIC3.58□□□□□ -1.84
RFX1P22670 RNU6-1041P-201ENST00000516254 102 ntBASIC3.58□□□□□ -1.84
RFX1P22670 RNU6-479P-201ENST00000516348 105 ntBASIC3.58□□□□□ -1.84
RFX1P22670 RNU6-1096P-201ENST00000517089 102 ntBASIC3.58□□□□□ -1.84
RFX1P22670 AC104027.1-201ENST00000521887 300 ntBASIC3.58□□□□□ -1.84
RFX1P22670 AC024995.1-201ENST00000523014 93 ntBASIC3.58□□□□□ -1.84
RFX1P22670 AC073413.2-201ENST00000604332 360 ntBASIC3.58□□□□□ -1.84
RFX1P22670 uc_338.1-201ENST00000612113 180 ntBASIC3.58□□□□□ -1.84
RFX1P22670 uc_338.4-201ENST00000616635 176 ntBASIC3.58□□□□□ -1.84
RFX1P22670 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
RFX1P22670 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
RFX1P22670 AC018630.2-201ENST00000534866 2403 ntBASIC3.58□□□□□ -1.84
RFX1P22670 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.57□□□□□ -1.84
RFX1P22670 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.57□□□□□ -1.84
RFX1P22670 RNU6-484P-201ENST00000384016 107 ntBASIC3.57□□□□□ -1.84
RFX1P22670 Y_RNA.432-201ENST00000384087 111 ntBASIC3.57□□□□□ -1.84
RFX1P22670 RNU2-51P-201ENST00000410708 197 ntBASIC3.57□□□□□ -1.84
RFX1P22670 RNA5SP229-201ENST00000410809 99 ntBASIC3.57□□□□□ -1.84
RFX1P22670 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC3.57□□□□□ -1.84
RFX1P22670 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.57□□□□□ -1.84
RFX1P22670 CST9LP2-201ENST00000437612 320 ntBASIC3.57□□□□□ -1.84
RFX1P22670 SNORD11-201ENST00000459124 84 ntBASIC3.57□□□□□ -1.84
RFX1P22670 RN7SL442P-201ENST00000473804 320 ntBASIC3.57□□□□□ -1.84
RFX1P22670 RNU6-197P-201ENST00000516680 100 ntBASIC3.57□□□□□ -1.84
RFX1P22670 RNU6-126P-201ENST00000516685 103 ntBASIC3.57□□□□□ -1.84
RFX1P22670 AC093331.1-201ENST00000521474 169 ntBASIC3.57□□□□□ -1.84
RFX1P22670 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.57□□□□□ -1.84
RFX1P22670 U6.108-201ENST00000637764 58 ntBASIC3.57□□□□□ -1.84
RFX1P22670 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.57□□□□□ -1.84
RFX1P22670 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
RFX1P22670 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
RFX1P22670 MIR422A-201ENST00000362286 90 ntBASIC3.56□□□□□ -1.84
RFX1P22670 RNU6-1209P-201ENST00000363655 107 ntBASIC3.56□□□□□ -1.84
RFX1P22670 SNORA20-201ENST00000384662 132 ntBASIC3.56□□□□□ -1.84
RFX1P22670 RNA5SP467-201ENST00000391274 118 ntBASIC3.56□□□□□ -1.84
RFX1P22670 SNORD77.4-201ENST00000516158 81 ntBASIC3.56□□□□□ -1.84
RFX1P22670 RNU6-1299P-201ENST00000516316 100 ntBASIC3.56□□□□□ -1.84
RFX1P22670 RNA5SP153-201ENST00000516498 76 ntBASIC3.56□□□□□ -1.84
RFX1P22670 SNORA64.4-201ENST00000516632 81 ntBASIC3.56□□□□□ -1.84
RFX1P22670 RNU1-142P-201ENST00000516682 145 ntBASIC3.56□□□□□ -1.84
RFX1P22670 CYCSP26-201ENST00000534107 320 ntBASIC3.56□□□□□ -1.84
RFX1P22670 AC026271.5-201ENST00000577873 130 ntBASIC3.56□□□□□ -1.84
RFX1P22670 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC3.56□□□□□ -1.84
RFX1P22670 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
RFX1P22670 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
RFX1P22670 FAM35CP-201ENST00000554755 2470 ntBASIC3.55□□□□□ -1.84
RFX1P22670 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
RFX1P22670 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
RFX1P22670 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
RFX1P22670 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
RFX1P22670 RNU6-597P-201ENST00000365620 102 ntBASIC3.55□□□□□ -1.84
RFX1P22670 AL031121.1-201ENST00000406553 254 ntBASIC3.55□□□□□ -1.84
RFX1P22670 RNU6-588P-201ENST00000410281 105 ntBASIC3.55□□□□□ -1.84
RFX1P22670 RNA5SP293-201ENST00000410527 113 ntBASIC3.55□□□□□ -1.84
RFX1P22670 CST2P1-201ENST00000425770 87 ntBASIC3.55□□□□□ -1.84
RFX1P22670 RPS26P45-201ENST00000471748 340 ntBASIC3.55□□□□□ -1.84
RFX1P22670 AC092991.1-201ENST00000477176 376 ntBASIC3.55□□□□□ -1.84
RFX1P22670 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.55□□□□□ -1.84
RFX1P22670 RNU6-341P-201ENST00000516973 96 ntBASIC3.55□□□□□ -1.84
RFX1P22670 SCARNA20.6-201ENST00000517251 106 ntBASIC3.55□□□□□ -1.84
RFX1P22670 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.55□□□□□ -1.84
RFX1P22670 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.54□□□□□ -1.84
RFX1P22670 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
RFX1P22670 RNU1-70P-201ENST00000362618 164 ntBASIC3.54□□□□□ -1.84
RFX1P22670 RNU6-1080P-201ENST00000383982 107 ntBASIC3.54□□□□□ -1.84
RFX1P22670 Y_RNA.420-201ENST00000384043 110 ntBASIC3.54□□□□□ -1.84
RFX1P22670 SNORA75.5-201ENST00000391291 81 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms