Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MIR4648-201ENST00000580107 72 ntBASIC2.99□□□□□ -1.93
COL6A1P12109 MIR4744-201ENST00000581563 82 ntBASIC2.99□□□□□ -1.93
COL6A1P12109 AL355297.2-201ENST00000604792 129 ntBASIC2.99□□□□□ -1.93
COL6A1P12109 Y_RNA.802-201ENST00000614892 130 ntBASIC2.99□□□□□ -1.93
COL6A1P12109 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.99□□□□□ -1.93
COL6A1P12109 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
COL6A1P12109 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.98□□□□□ -1.93
COL6A1P12109 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.98□□□□□ -1.93
COL6A1P12109 RNA5SP393-201ENST00000363423 117 ntBASIC2.98□□□□□ -1.93
COL6A1P12109 RNU1-91P-201ENST00000364746 163 ntBASIC2.98□□□□□ -1.93
COL6A1P12109 SNORA67.1-201ENST00000364749 141 ntBASIC2.98□□□□□ -1.93
COL6A1P12109 MIR548B-201ENST00000385247 97 ntBASIC2.98□□□□□ -1.93
COL6A1P12109 RNU6-239P-201ENST00000390990 99 ntBASIC2.98□□□□□ -1.93
COL6A1P12109 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.98□□□□□ -1.93
COL6A1P12109 RNU4-53P-201ENST00000410828 140 ntBASIC2.98□□□□□ -1.93
COL6A1P12109 CR769767.1-201ENST00000436337 346 ntBASIC2.98□□□□□ -1.93
COL6A1P12109 AL135790.2-201ENST00000437701 267 ntBASIC2.98□□□□□ -1.93
COL6A1P12109 RNU5F-4P-201ENST00000516581 114 ntBASIC2.98□□□□□ -1.93
COL6A1P12109 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.98□□□□□ -1.93
COL6A1P12109 RPL30P11-203ENST00000598995 310 ntBASIC2.98□□□□□ -1.93
COL6A1P12109 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.98□□□□□ -1.93
COL6A1P12109 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
COL6A1P12109 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.98□□□□□ -1.93
COL6A1P12109 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.98□□□□□ -1.93
COL6A1P12109 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
COL6A1P12109 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.97□□□□□ -1.93
COL6A1P12109 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
COL6A1P12109 Y_RNA.215-201ENST00000364204 112 ntBASIC2.97□□□□□ -1.93
COL6A1P12109 RNU6-417P-201ENST00000384712 107 ntBASIC2.97□□□□□ -1.93
COL6A1P12109 MIR626-201ENST00000385032 94 ntBASIC2.97□□□□□ -1.93
COL6A1P12109 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
COL6A1P12109 RNU6-482P-201ENST00000391068 107 ntBASIC2.97□□□□□ -1.93
COL6A1P12109 MIR1289-2-201ENST00000408360 111 ntBASIC2.97□□□□□ -1.93
COL6A1P12109 RNA5SP425-201ENST00000410336 112 ntBASIC2.97□□□□□ -1.93
COL6A1P12109 RN7SKP223-201ENST00000410582 62 ntBASIC2.97□□□□□ -1.93
COL6A1P12109 AL591806.2-201ENST00000433122 173 ntBASIC2.97□□□□□ -1.93
COL6A1P12109 AL162725.1-201ENST00000435405 301 ntBASIC2.97□□□□□ -1.93
COL6A1P12109 AC074290.1-201ENST00000448883 135 ntBASIC2.97□□□□□ -1.93
COL6A1P12109 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.97□□□□□ -1.93
COL6A1P12109 RNU6-62P-201ENST00000516526 102 ntBASIC2.97□□□□□ -1.93
COL6A1P12109 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.97□□□□□ -1.93
COL6A1P12109 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.97□□□□□ -1.93
COL6A1P12109 Y_RNA.778-201ENST00000620203 90 ntBASIC2.97□□□□□ -1.93
COL6A1P12109 AC134026.1-201ENST00000623249 2239 ntBASIC2.97□□□□□ -1.93
COL6A1P12109 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.97□□□□□ -1.93
COL6A1P12109 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.97□□□□□ -1.93
COL6A1P12109 AC093831.2-201ENST00000624393 3427 ntBASIC2.97□□□□□ -1.93
COL6A1P12109 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.97□□□□□ -1.93
COL6A1P12109 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.96□□□□□ -1.93
COL6A1P12109 RNU6-1205P-201ENST00000363625 106 ntBASIC2.96□□□□□ -1.94
COL6A1P12109 SNORD32B-201ENST00000364460 84 ntBASIC2.96□□□□□ -1.94
COL6A1P12109 Y_RNA.361-201ENST00000365515 120 ntBASIC2.96□□□□□ -1.94
COL6A1P12109 Y_RNA.568-201ENST00000384742 113 ntBASIC2.96□□□□□ -1.94
COL6A1P12109 RNU6-578P-201ENST00000390980 103 ntBASIC2.96□□□□□ -1.94
COL6A1P12109 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.96□□□□□ -1.94
COL6A1P12109 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.96□□□□□ -1.94
COL6A1P12109 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.96□□□□□ -1.94
COL6A1P12109 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC2.96□□□□□ -1.94
COL6A1P12109 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.96□□□□□ -1.94
COL6A1P12109 AC107027.2-201ENST00000512197 115 ntBASIC2.96□□□□□ -1.94
COL6A1P12109 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.96□□□□□ -1.94
COL6A1P12109 MIR4431-201ENST00000579990 94 ntBASIC2.96□□□□□ -1.94
COL6A1P12109 MIR5688-201ENST00000580619 83 ntBASIC2.96□□□□□ -1.94
COL6A1P12109 ZNF861P-201ENST00000588126 639 ntBASIC2.96□□□□□ -1.94
COL6A1P12109 AC090517.3-201ENST00000625170 141 ntBASIC2.96□□□□□ -1.94
COL6A1P12109 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
COL6A1P12109 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
COL6A1P12109 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.95□□□□□ -1.94
COL6A1P12109 RNU6-151P-201ENST00000364158 107 ntBASIC2.95□□□□□ -1.94
COL6A1P12109 Y_RNA.310-201ENST00000365063 113 ntBASIC2.95□□□□□ -1.94
COL6A1P12109 RNU1-52P-201ENST00000384190 164 ntBASIC2.95□□□□□ -1.94
COL6A1P12109 RNU6-376P-201ENST00000384731 106 ntBASIC2.95□□□□□ -1.94
COL6A1P12109 MIR526A2-201ENST00000390198 65 ntBASIC2.95□□□□□ -1.94
COL6A1P12109 MIR300-201ENST00000401138 83 ntBASIC2.95□□□□□ -1.94
COL6A1P12109 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.95□□□□□ -1.94
COL6A1P12109 AC114982.1-201ENST00000469402 321 ntBASIC2.95□□□□□ -1.94
COL6A1P12109 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.95□□□□□ -1.94
COL6A1P12109 Y_RNA.676-201ENST00000516393 96 ntBASIC2.95□□□□□ -1.94
COL6A1P12109 SNORD116-25-201ENST00000516517 92 ntBASIC2.95□□□□□ -1.94
COL6A1P12109 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.95□□□□□ -1.94
COL6A1P12109 MIR3605-201ENST00000583214 100 ntBASIC2.95□□□□□ -1.94
COL6A1P12109 AC025754.2-201ENST00000606491 432 ntBASIC2.95□□□□□ -1.94
COL6A1P12109 U4atac.1-201ENST00000618345 95 ntBASIC2.95□□□□□ -1.94
COL6A1P12109 SNORD114-7-201ENST00000362520 77 ntBASIC2.94□□□□□ -1.94
COL6A1P12109 RNU6-1048P-201ENST00000364054 107 ntBASIC2.94□□□□□ -1.94
COL6A1P12109 SNORA51.4-201ENST00000364993 124 ntBASIC2.94□□□□□ -1.94
COL6A1P12109 MIR518C-201ENST00000384822 101 ntBASIC2.94□□□□□ -1.94
COL6A1P12109 RNU6-131P-201ENST00000391144 107 ntBASIC2.94□□□□□ -1.94
COL6A1P12109 MIR1185-2-201ENST00000408687 86 ntBASIC2.94□□□□□ -1.94
COL6A1P12109 RNU2-51P-201ENST00000410708 197 ntBASIC2.94□□□□□ -1.94
COL6A1P12109 AL135786.1-201ENST00000415892 214 ntBASIC2.94□□□□□ -1.94
COL6A1P12109 AC108210.2-201ENST00000503681 201 ntBASIC2.94□□□□□ -1.94
COL6A1P12109 RNA5SP320-201ENST00000516263 124 ntBASIC2.94□□□□□ -1.94
COL6A1P12109 RNU6-1098P-201ENST00000516772 96 ntBASIC2.94□□□□□ -1.94
COL6A1P12109 FO624990.1-201ENST00000636373 85 ntBASIC2.94□□□□□ -1.94
COL6A1P12109 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.94□□□□□ -1.94
COL6A1P12109 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
COL6A1P12109 Y_RNA.24-201ENST00000362508 103 ntBASIC2.93□□□□□ -1.94
COL6A1P12109 snoU2_19.4-201ENST00000364329 80 ntBASIC2.93□□□□□ -1.94
COL6A1P12109 RNU4-10P-201ENST00000364383 140 ntBASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms