Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 Y_RNA.243-201ENST00000364481 109 ntBASIC1.36□□□□□ -2.19
VIMP08670 Y_RNA.384-201ENST00000383909 102 ntBASIC1.36□□□□□ -2.19
VIMP08670 MIR559-201ENST00000385188 96 ntBASIC1.36□□□□□ -2.19
VIMP08670 RNY4P36-201ENST00000391116 96 ntBASIC1.36□□□□□ -2.19
VIMP08670 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.36□□□□□ -2.19
VIMP08670 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.36□□□□□ -2.19
VIMP08670 AC091951.2-201ENST00000500762 203 ntBASIC1.36□□□□□ -2.19
VIMP08670 RNU6-1278P-201ENST00000516130 107 ntBASIC1.36□□□□□ -2.19
VIMP08670 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.36□□□□□ -2.19
VIMP08670 SNORA28-201ENST00000606769 126 ntBASIC1.36□□□□□ -2.19
VIMP08670 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
VIMP08670 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
VIMP08670 Y_RNA.265-201ENST00000364677 108 ntBASIC1.35□□□□□ -2.19
VIMP08670 RNU6-117P-201ENST00000365415 107 ntBASIC1.35□□□□□ -2.19
VIMP08670 SUMO1P2-201ENST00000452524 304 ntBASIC1.35□□□□□ -2.19
VIMP08670 RPL30P7-201ENST00000479312 323 ntBASIC1.35□□□□□ -2.19
VIMP08670 RNU6-1291P-201ENST00000516591 104 ntBASIC1.35□□□□□ -2.19
VIMP08670 RNU2-56P-201ENST00000516826 190 ntBASIC1.35□□□□□ -2.19
VIMP08670 RNU6-341P-201ENST00000516973 96 ntBASIC1.35□□□□□ -2.19
VIMP08670 RNU6-548P-201ENST00000517083 115 ntBASIC1.35□□□□□ -2.19
VIMP08670 Y_RNA.718-201ENST00000517110 102 ntBASIC1.35□□□□□ -2.19
VIMP08670 AC068338.1-201ENST00000565567 176 ntBASIC1.35□□□□□ -2.19
VIMP08670 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.35□□□□□ -2.19
VIMP08670 AC106754.2-201ENST00000623006 233 ntBASIC1.35□□□□□ -2.19
VIMP08670 SNORA1B-201ENST00000362535 133 ntBASIC1.34□□□□□ -2.19
VIMP08670 RNU6-490P-201ENST00000362985 107 ntBASIC1.34□□□□□ -2.19
VIMP08670 RNY3P4-201ENST00000384428 101 ntBASIC1.34□□□□□ -2.19
VIMP08670 RNU6-136P-201ENST00000384663 107 ntBASIC1.34□□□□□ -2.19
VIMP08670 MIR660-201ENST00000385235 97 ntBASIC1.34□□□□□ -2.19
VIMP08670 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.34□□□□□ -2.19
VIMP08670 AC096644.2-201ENST00000429278 159 ntBASIC1.34□□□□□ -2.19
VIMP08670 FCF1P4-201ENST00000448326 183 ntBASIC1.34□□□□□ -2.19
VIMP08670 AC092991.1-201ENST00000477176 376 ntBASIC1.34□□□□□ -2.19
VIMP08670 RNU6-63P-201ENST00000516690 95 ntBASIC1.34□□□□□ -2.19
VIMP08670 RNU6-699P-201ENST00000517081 110 ntBASIC1.34□□□□□ -2.19
VIMP08670 MIR4778-201ENST00000577635 80 ntBASIC1.34□□□□□ -2.19
VIMP08670 U2.1-201ENST00000618978 145 ntBASIC1.34□□□□□ -2.19
VIMP08670 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.2
VIMP08670 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
VIMP08670 SNORD115-30-201ENST00000364117 82 ntBASIC1.33□□□□□ -2.2
VIMP08670 RNU6-1040P-201ENST00000383974 107 ntBASIC1.33□□□□□ -2.2
VIMP08670 RNU6-939P-201ENST00000384634 107 ntBASIC1.33□□□□□ -2.2
VIMP08670 MIR562-201ENST00000384894 95 ntBASIC1.33□□□□□ -2.2
VIMP08670 CALM2P4-201ENST00000430810 426 ntBASIC1.33□□□□□ -2.2
VIMP08670 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.33□□□□□ -2.2
VIMP08670 AC099799.1-201ENST00000439809 192 ntBASIC1.33□□□□□ -2.2
VIMP08670 RPL39P38-201ENST00000467018 153 ntBASIC1.33□□□□□ -2.2
VIMP08670 RN7SKP179-201ENST00000516126 217 ntBASIC1.33□□□□□ -2.2
VIMP08670 RNU6-875P-201ENST00000516488 106 ntBASIC1.33□□□□□ -2.2
VIMP08670 RNA5SP168-201ENST00000516642 112 ntBASIC1.33□□□□□ -2.2
VIMP08670 RNU2-12P-201ENST00000517216 168 ntBASIC1.33□□□□□ -2.2
VIMP08670 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.33□□□□□ -2.2
VIMP08670 AC019288.1-201ENST00000557918 224 ntBASIC1.33□□□□□ -2.2
VIMP08670 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.33□□□□□ -2.2
VIMP08670 AC015720.1-201ENST00000565251 277 ntBASIC1.33□□□□□ -2.2
VIMP08670 AL355375.2-201ENST00000574825 175 ntBASIC1.33□□□□□ -2.2
VIMP08670 MIR3664-201ENST00000579074 99 ntBASIC1.33□□□□□ -2.2
VIMP08670 RBM11P1-201ENST00000604951 799 ntBASIC1.33□□□□□ -2.2
VIMP08670 AC084781.2-201ENST00000615568 161 ntBASIC1.33□□□□□ -2.2
VIMP08670 AC138305.3-201ENST00000624988 240 ntBASIC1.33□□□□□ -2.2
VIMP08670 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
VIMP08670 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
VIMP08670 RNA5SP126-201ENST00000365092 109 ntBASIC1.32□□□□□ -2.2
VIMP08670 RNA5SP190-201ENST00000365222 118 ntBASIC1.32□□□□□ -2.2
VIMP08670 RNU6-505P-201ENST00000384427 107 ntBASIC1.32□□□□□ -2.2
VIMP08670 MIR628-201ENST00000385229 95 ntBASIC1.32□□□□□ -2.2
VIMP08670 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
VIMP08670 SNORD78.2-201ENST00000391076 69 ntBASIC1.32□□□□□ -2.2
VIMP08670 RNU5A-5P-201ENST00000411054 116 ntBASIC1.32□□□□□ -2.2
VIMP08670 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.32□□□□□ -2.2
VIMP08670 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.32□□□□□ -2.2
VIMP08670 OR9P1P-201ENST00000496431 281 ntBASIC1.32□□□□□ -2.2
VIMP08670 RNU1-41P-201ENST00000516161 162 ntBASIC1.32□□□□□ -2.2
VIMP08670 RNU1-48P-201ENST00000516400 162 ntBASIC1.32□□□□□ -2.2
VIMP08670 RN7SKP88-201ENST00000516847 250 ntBASIC1.32□□□□□ -2.2
VIMP08670 AP002004.2-201ENST00000531656 154 ntBASIC1.32□□□□□ -2.2
VIMP08670 7SK.8-201ENST00000612110 250 ntBASIC1.32□□□□□ -2.2
VIMP08670 7SK.11-201ENST00000615477 250 ntBASIC1.32□□□□□ -2.2
VIMP08670 AC011476.5-201ENST00000615594 130 ntBASIC1.32□□□□□ -2.2
VIMP08670 7SK.13-201ENST00000622040 250 ntBASIC1.32□□□□□ -2.2
VIMP08670 AC005592.1-201ENST00000566527 1640 ntBASIC1.31□□□□□ -2.2
VIMP08670 SNORD114-7-201ENST00000362520 77 ntBASIC1.31□□□□□ -2.2
VIMP08670 Y_RNA.101-201ENST00000363154 102 ntBASIC1.31□□□□□ -2.2
VIMP08670 RNU4-76P-201ENST00000364509 141 ntBASIC1.31□□□□□ -2.2
VIMP08670 Y_RNA.361-201ENST00000365515 120 ntBASIC1.31□□□□□ -2.2
VIMP08670 RNU6-708P-201ENST00000384217 107 ntBASIC1.31□□□□□ -2.2
VIMP08670 RNU6-424P-201ENST00000384367 105 ntBASIC1.31□□□□□ -2.2
VIMP08670 U8.16-201ENST00000391279 133 ntBASIC1.31□□□□□ -2.2
VIMP08670 AC093019.1-201ENST00000443135 252 ntBASIC1.31□□□□□ -2.2
VIMP08670 AC233266.1-201ENST00000454518 96 ntBASIC1.31□□□□□ -2.2
VIMP08670 Y_RNA.632-201ENST00000459189 102 ntBASIC1.31□□□□□ -2.2
VIMP08670 snoU13.15-201ENST00000459407 104 ntBASIC1.31□□□□□ -2.2
VIMP08670 snoU13.26-201ENST00000459452 105 ntBASIC1.31□□□□□ -2.2
VIMP08670 RNU6-1012P-201ENST00000516606 109 ntBASIC1.31□□□□□ -2.2
VIMP08670 RNU7-28P-201ENST00000516759 62 ntBASIC1.31□□□□□ -2.2
VIMP08670 AC090821.2-201ENST00000523552 176 ntBASIC1.31□□□□□ -2.2
VIMP08670 RAB11AP2-201ENST00000545905 639 ntBASIC1.31□□□□□ -2.2
VIMP08670 AC006380.1-201ENST00000603598 186 ntBASIC1.31□□□□□ -2.2
VIMP08670 AC242852.1-201ENST00000612151 96 ntBASIC1.31□□□□□ -2.2
VIMP08670 AC244015.1-201ENST00000622301 99 ntBASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 123 ms