Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 NDUFB4P6-201ENST00000436819 366 ntBASIC2.58□□□□□ -2
COL3A1P02461 RPL23AP58-201ENST00000440453 469 ntBASIC2.58□□□□□ -2
COL3A1P02461 AC091179.3-201ENST00000474761 144 ntBASIC2.58□□□□□ -2
COL3A1P02461 RNU6-1333P-201ENST00000516162 93 ntBASIC2.58□□□□□ -2
COL3A1P02461 RNU6-581P-201ENST00000516214 105 ntBASIC2.58□□□□□ -2
COL3A1P02461 RNU6-971P-201ENST00000516920 106 ntBASIC2.58□□□□□ -2
COL3A1P02461 AC100767.1-201ENST00000528178 123 ntBASIC2.58□□□□□ -2
COL3A1P02461 MIR3136-201ENST00000583498 78 ntBASIC2.58□□□□□ -2
COL3A1P02461 AC012531.5-201ENST00000611375 151 ntBASIC2.58□□□□□ -2
COL3A1P02461 Xist_exon1.1-201ENST00000618930 85 ntBASIC2.58□□□□□ -2
COL3A1P02461 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
COL3A1P02461 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
COL3A1P02461 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
COL3A1P02461 Y_RNA.40-201ENST00000362645 93 ntBASIC2.57□□□□□ -2
COL3A1P02461 RNU4-11P-201ENST00000365287 132 ntBASIC2.57□□□□□ -2
COL3A1P02461 RNU6-487P-201ENST00000365430 104 ntBASIC2.57□□□□□ -2
COL3A1P02461 SNORA8.3-201ENST00000384679 139 ntBASIC2.57□□□□□ -2
COL3A1P02461 MIR626-201ENST00000385032 94 ntBASIC2.57□□□□□ -2
COL3A1P02461 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.57□□□□□ -2
COL3A1P02461 U3.40-201ENST00000408706 208 ntBASIC2.57□□□□□ -2
COL3A1P02461 RNU6-710P-201ENST00000410424 105 ntBASIC2.57□□□□□ -2
COL3A1P02461 AC099548.1-201ENST00000421443 426 ntBASIC2.57□□□□□ -2
COL3A1P02461 AC027124.2-201ENST00000428249 105 ntBASIC2.57□□□□□ -2
COL3A1P02461 HMGN2P21-201ENST00000447764 270 ntBASIC2.57□□□□□ -2
COL3A1P02461 SNORA25.12-201ENST00000516202 82 ntBASIC2.57□□□□□ -2
COL3A1P02461 SNORA31.11-201ENST00000516528 139 ntBASIC2.57□□□□□ -2
COL3A1P02461 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.57□□□□□ -2
COL3A1P02461 MIR3923-201ENST00000579521 83 ntBASIC2.57□□□□□ -2
COL3A1P02461 AC090897.2-201ENST00000581715 130 ntBASIC2.57□□□□□ -2
COL3A1P02461 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.57□□□□□ -2
COL3A1P02461 AC013791.1-201ENST00000616619 62 ntBASIC2.57□□□□□ -2
COL3A1P02461 TUG1_4.1-201ENST00000619464 181 ntBASIC2.57□□□□□ -2
COL3A1P02461 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.56□□□□□ -2
COL3A1P02461 MIRLET7G-201ENST00000362280 84 ntBASIC2.56□□□□□ -2
COL3A1P02461 RNU6-799P-201ENST00000363567 107 ntBASIC2.56□□□□□ -2
COL3A1P02461 RNU6-727P-201ENST00000363592 107 ntBASIC2.56□□□□□ -2
COL3A1P02461 Y_RNA.218-201ENST00000364218 104 ntBASIC2.56□□□□□ -2
COL3A1P02461 Y_RNA.293-201ENST00000364908 93 ntBASIC2.56□□□□□ -2
COL3A1P02461 SNORD116-14-201ENST00000383894 92 ntBASIC2.56□□□□□ -2
COL3A1P02461 SNORD116-17-201ENST00000383929 92 ntBASIC2.56□□□□□ -2
COL3A1P02461 RNU6-80P-201ENST00000384195 107 ntBASIC2.56□□□□□ -2
COL3A1P02461 RNU6-622P-201ENST00000384272 103 ntBASIC2.56□□□□□ -2
COL3A1P02461 SNORD116-15-201ENST00000384445 92 ntBASIC2.56□□□□□ -2
COL3A1P02461 SNORD116-19-201ENST00000384729 92 ntBASIC2.56□□□□□ -2
COL3A1P02461 CYCSP49-201ENST00000420810 319 ntBASIC2.56□□□□□ -2
COL3A1P02461 HMGN2P10-201ENST00000448085 265 ntBASIC2.56□□□□□ -2
COL3A1P02461 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.56□□□□□ -2
COL3A1P02461 RNU6-1053P-201ENST00000515930 101 ntBASIC2.56□□□□□ -2
COL3A1P02461 RNU6-107P-201ENST00000516643 102 ntBASIC2.56□□□□□ -2
COL3A1P02461 RNU2-12P-201ENST00000517216 168 ntBASIC2.56□□□□□ -2
COL3A1P02461 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.56□□□□□ -2
COL3A1P02461 AC021739.1-201ENST00000559631 174 ntBASIC2.56□□□□□ -2
COL3A1P02461 AC090616.3-201ENST00000582184 217 ntBASIC2.56□□□□□ -2
COL3A1P02461 MIR4781-201ENST00000585250 76 ntBASIC2.56□□□□□ -2
COL3A1P02461 AC005520.5-201ENST00000613926 164 ntBASIC2.56□□□□□ -2
COL3A1P02461 HOTTIP_4.1-201ENST00000618195 165 ntBASIC2.56□□□□□ -2
COL3A1P02461 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.56□□□□□ -2
COL3A1P02461 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.56□□□□□ -2
COL3A1P02461 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
COL3A1P02461 AC010329.5-201ENST00000623497 2174 ntBASIC2.55□□□□□ -2
COL3A1P02461 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.55□□□□□ -2
COL3A1P02461 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.55□□□□□ -2
COL3A1P02461 RNU6-50P-201ENST00000362356 103 ntBASIC2.55□□□□□ -2
COL3A1P02461 RNU6-834P-201ENST00000362367 110 ntBASIC2.55□□□□□ -2
COL3A1P02461 Y_RNA.287-201ENST00000364853 94 ntBASIC2.55□□□□□ -2
COL3A1P02461 SNORA17.3-201ENST00000391159 129 ntBASIC2.55□□□□□ -2
COL3A1P02461 MIR208B-201ENST00000401172 77 ntBASIC2.55□□□□□ -2
COL3A1P02461 BPY2DP-201ENST00000422208 265 ntBASIC2.55□□□□□ -2
COL3A1P02461 AIG1P1-201ENST00000503376 148 ntBASIC2.55□□□□□ -2
COL3A1P02461 SNORA31.16-201ENST00000516773 139 ntBASIC2.55□□□□□ -2
COL3A1P02461 RNA5SP468-201ENST00000516782 93 ntBASIC2.55□□□□□ -2
COL3A1P02461 RNU6-1234P-201ENST00000516877 103 ntBASIC2.55□□□□□ -2
COL3A1P02461 DEFB131C-201ENST00000528817 165 ntBASIC2.55□□□□□ -2
COL3A1P02461 AC069294.1-201ENST00000608397 350 ntBASIC2.55□□□□□ -2
COL3A1P02461 AC008873.1-201ENST00000625051 138 ntBASIC2.55□□□□□ -2
COL3A1P02461 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.54□□□□□ -2
COL3A1P02461 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
COL3A1P02461 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC2.54□□□□□ -2
COL3A1P02461 RNU1-17P-201ENST00000363022 152 ntBASIC2.54□□□□□ -2
COL3A1P02461 Y_RNA.542-201ENST00000384641 111 ntBASIC2.54□□□□□ -2
COL3A1P02461 MIR549A-201ENST00000385268 96 ntBASIC2.54□□□□□ -2
COL3A1P02461 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.54□□□□□ -2
COL3A1P02461 RPS27AP10-201ENST00000496103 208 ntBASIC2.54□□□□□ -2
COL3A1P02461 Y_RNA.686-201ENST00000516548 134 ntBASIC2.54□□□□□ -2
COL3A1P02461 RNU6-295P-201ENST00000516901 104 ntBASIC2.54□□□□□ -2
COL3A1P02461 AP002001.1-203ENST00000534002 267 ntBASIC2.54□□□□□ -2
COL3A1P02461 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.54□□□□□ -2
COL3A1P02461 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC2.54□□□□□ -2
COL3A1P02461 MIR5688-201ENST00000580619 83 ntBASIC2.54□□□□□ -2
COL3A1P02461 SNORD98-201ENST00000636377 67 ntBASIC2.54□□□□□ -2
COL3A1P02461 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
COL3A1P02461 AC103988.1-201ENST00000566382 2177 ntBASIC2.54□□□□□ -2
COL3A1P02461 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
COL3A1P02461 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.54□□□□□ -2
COL3A1P02461 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.53□□□□□ -2
COL3A1P02461 RNU6-1264P-201ENST00000383891 107 ntBASIC2.53□□□□□ -2
COL3A1P02461 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.53□□□□□ -2
COL3A1P02461 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.53□□□□□ -2
COL3A1P02461 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.53□□□□□ -2
COL3A1P02461 RNU4-57P-201ENST00000515980 135 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms