Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
CPSF4O95639 SNORA1B-201ENST00000362535 133 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 SNORA27.1-201ENST00000362604 124 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 RNU4-79P-201ENST00000362764 141 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 Y_RNA.364-201ENST00000365532 101 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 Y_RNA.557-201ENST00000384680 107 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 MTCYBP4-201ENST00000401524 249 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 U8.22-201ENST00000459141 133 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 RNU7-87P-201ENST00000459343 62 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 RNU6-329P-201ENST00000459618 107 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 AC092989.1-201ENST00000481235 277 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.62□□□□□ -2.31
CPSF4O95639 RNU6-947P-201ENST00000516264 106 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 RNU2-56P-201ENST00000516826 190 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 RNU6-341P-201ENST00000516973 96 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 MIR4661-201ENST00000582720 75 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 AC090517.2-201ENST00000614966 680 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 AC104260.1-201ENST00000616660 539 ntBASIC0.62□□□□□ -2.31
CPSF4O95639 Y_RNA.2-201ENST00000362330 96 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 RNU6-879P-201ENST00000364328 108 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.61□□□□□ -2.31
CPSF4O95639 RNU6-376P-201ENST00000384731 106 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 MIR548F1-201ENST00000408667 84 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 Y_RNA.594-201ENST00000410373 140 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 RNU6-1050P-201ENST00000410388 107 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 AC074085.1-201ENST00000413598 418 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 POLR2J4-204ENST00000418424 324 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 AL353997.1-201ENST00000432936 108 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.61□□□□□ -2.31
CPSF4O95639 AC245047.7-201ENST00000440265 293 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 AL137792.2-201ENST00000443484 235 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 RNU7-12P-201ENST00000516030 62 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 SNORA31.4-201ENST00000516049 129 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 Y_RNA.670-201ENST00000516255 105 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 RNU6-1291P-201ENST00000516591 104 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 RNU6-1016P-201ENST00000516689 94 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 RNU7-28P-201ENST00000516759 62 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 RNA5SP102-201ENST00000516865 106 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 AC105029.1-201ENST00000520250 669 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.61□□□□□ -2.31
CPSF4O95639 AP002001.1-203ENST00000534002 267 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 AC018448.1-201ENST00000552843 316 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.61□□□□□ -2.31
CPSF4O95639 MIR3684-201ENST00000579779 74 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 AL590095.2-201ENST00000604136 117 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 U6.115-201ENST00000636045 103 ntBASIC0.61□□□□□ -2.31
CPSF4O95639 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 MIRLET7C-201ENST00000362160 84 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 RNY1P16-201ENST00000363063 111 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 RNU6-454P-201ENST00000364292 107 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 RNU1-36P-201ENST00000365130 165 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 SNORA2.2-201ENST00000365473 135 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 Y_RNA.363-201ENST00000365529 113 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 Y_RNA.498-201ENST00000384460 102 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 MIR19B1-201ENST00000384829 87 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 MIR508-201ENST00000384857 115 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 MIR562-201ENST00000384894 95 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 RNU6-700P-201ENST00000391043 107 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 AL451046.2-201ENST00000403074 277 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 MIR548K-201ENST00000408406 116 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 MIR548F5-201ENST00000408421 86 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 PCNPP5-201ENST00000452246 481 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 AC022493.2-201ENST00000506122 481 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.6□□□□□ -2.31
CPSF4O95639 RNU6-1053P-201ENST00000515930 101 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 ACA64.5-201ENST00000516207 127 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 SCARNA16.2-201ENST00000516520 172 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 AP002004.2-201ENST00000531656 154 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 AC011604.1-201ENST00000545978 196 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.6□□□□□ -2.31
CPSF4O95639 AC018638.8-201ENST00000588755 281 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 AL117336.2-201ENST00000602435 335 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 AL020996.3-201ENST00000606617 222 ntBASIC0.6□□□□□ -2.31
CPSF4O95639 MIR410-201ENST00000362222 80 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 Y_RNA.86-201ENST00000363020 111 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 Y_RNA.124-201ENST00000363339 93 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 RNU6-117P-201ENST00000365415 107 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 Y_RNA.358-201ENST00000365491 99 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 RNU6-318P-201ENST00000384283 103 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 RNU6-1215P-201ENST00000384441 102 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 SNORD116-4-201ENST00000384733 96 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 RNA5SP482-201ENST00000391269 118 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 RNU5A-5P-201ENST00000411054 116 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.59□□□□□ -2.31
CPSF4O95639 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.59□□□□□ -2.31
CPSF4O95639 MTCYBP10-201ENST00000424905 650 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 RPS3AP52-201ENST00000435639 297 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 AC002429.1-201ENST00000437672 148 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 AC104332.1-201ENST00000440471 797 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 RNU6-625P-201ENST00000459412 107 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 SNORD124-201ENST00000459577 104 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC0.59□□□□□ -2.31
CPSF4O95639 AC074133.1-201ENST00000515696 183 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 RNU6-322P-201ENST00000516010 103 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 SNORD79.1-201ENST00000516069 84 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 RNU6-1278P-201ENST00000516130 107 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 RNU6-718P-201ENST00000516166 105 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 RNU6-1116P-201ENST00000517269 99 ntBASIC0.59□□□□□ -2.31
CPSF4O95639 AC022868.1-201ENST00000517767 391 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms