Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC016909.1-201ENST00000415916 166 ntBASIC2.39□□□□□ -2.03
FOXN3O00409 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.39□□□□□ -2.03
FOXN3O00409 RNU1-131P-201ENST00000458943 161 ntBASIC2.39□□□□□ -2.03
FOXN3O00409 AC055731.1-201ENST00000474387 401 ntBASIC2.39□□□□□ -2.03
FOXN3O00409 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.39□□□□□ -2.03
FOXN3O00409 RNU6-155P-201ENST00000516347 100 ntBASIC2.39□□□□□ -2.03
FOXN3O00409 MIR514B-201ENST00000516774 80 ntBASIC2.39□□□□□ -2.03
FOXN3O00409 RNU2-19P-201ENST00000517288 84 ntBASIC2.39□□□□□ -2.03
FOXN3O00409 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.39□□□□□ -2.03
FOXN3O00409 SNORD53-201ENST00000579969 78 ntBASIC2.39□□□□□ -2.03
FOXN3O00409 AC037487.3-201ENST00000606668 112 ntBASIC2.39□□□□□ -2.03
FOXN3O00409 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.39□□□□□ -2.03
FOXN3O00409 AC127459.3-201ENST00000624328 466 ntBASIC2.39□□□□□ -2.03
FOXN3O00409 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
FOXN3O00409 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
FOXN3O00409 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.38□□□□□ -2.03
FOXN3O00409 AC080100.1-201ENST00000624239 5356 ntBASIC2.38□□□□□ -2.03
FOXN3O00409 RNU6-324P-201ENST00000363957 106 ntBASIC2.38□□□□□ -2.03
FOXN3O00409 RNU6-740P-201ENST00000364734 105 ntBASIC2.38□□□□□ -2.03
FOXN3O00409 RNU6-514P-201ENST00000384208 107 ntBASIC2.38□□□□□ -2.03
FOXN3O00409 RNU6-417P-201ENST00000384712 107 ntBASIC2.38□□□□□ -2.03
FOXN3O00409 MIR1283-2-201ENST00000408621 87 ntBASIC2.38□□□□□ -2.03
FOXN3O00409 AL356379.1-201ENST00000414105 126 ntBASIC2.38□□□□□ -2.03
FOXN3O00409 MTCO1P5-201ENST00000433573 344 ntBASIC2.38□□□□□ -2.03
FOXN3O00409 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.38□□□□□ -2.03
FOXN3O00409 MIR3684-201ENST00000579779 74 ntBASIC2.38□□□□□ -2.03
FOXN3O00409 AC006380.1-201ENST00000603598 186 ntBASIC2.38□□□□□ -2.03
FOXN3O00409 AC009779.6-201ENST00000603972 165 ntBASIC2.38□□□□□ -2.03
FOXN3O00409 AC009831.4-201ENST00000620744 325 ntBASIC2.38□□□□□ -2.03
FOXN3O00409 RNA5SP276-201ENST00000362580 94 ntBASIC2.37□□□□□ -2.03
FOXN3O00409 RNU6-862P-201ENST00000362804 105 ntBASIC2.37□□□□□ -2.03
FOXN3O00409 RNU4-80P-201ENST00000363200 141 ntBASIC2.37□□□□□ -2.03
FOXN3O00409 RNU6-200P-201ENST00000364743 107 ntBASIC2.37□□□□□ -2.03
FOXN3O00409 Y_RNA.297-201ENST00000364950 91 ntBASIC2.37□□□□□ -2.03
FOXN3O00409 RNU6-209P-201ENST00000384118 107 ntBASIC2.37□□□□□ -2.03
FOXN3O00409 RNU6-662P-201ENST00000384253 104 ntBASIC2.37□□□□□ -2.03
FOXN3O00409 MIR1298-201ENST00000408783 112 ntBASIC2.37□□□□□ -2.03
FOXN3O00409 AC009310.1-201ENST00000414414 451 ntBASIC2.37□□□□□ -2.03
FOXN3O00409 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXN3O00409 RNA5SP233-201ENST00000459153 113 ntBASIC2.37□□□□□ -2.03
FOXN3O00409 AC091959.1-201ENST00000495857 238 ntBASIC2.37□□□□□ -2.03
FOXN3O00409 SNORD116-28-201ENST00000516123 91 ntBASIC2.37□□□□□ -2.03
FOXN3O00409 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.37□□□□□ -2.03
FOXN3O00409 DEFB117-201ENST00000602356 141 ntBASIC2.37□□□□□ -2.03
FOXN3O00409 BX284668.6-201ENST00000606899 438 ntBASIC2.37□□□□□ -2.03
FOXN3O00409 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.37□□□□□ -2.03
FOXN3O00409 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.36□□□□□ -2.03
FOXN3O00409 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
FOXN3O00409 RNU6-407P-201ENST00000365280 104 ntBASIC2.36□□□□□ -2.03
FOXN3O00409 RNA5SP465-201ENST00000391195 109 ntBASIC2.36□□□□□ -2.03
FOXN3O00409 RNA5SP450-201ENST00000411206 102 ntBASIC2.36□□□□□ -2.03
FOXN3O00409 AC005042.3-201ENST00000453230 174 ntBASIC2.36□□□□□ -2.03
FOXN3O00409 SNORD65B-201ENST00000459126 73 ntBASIC2.36□□□□□ -2.03
FOXN3O00409 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.36□□□□□ -2.03
FOXN3O00409 MIR4287-201ENST00000579398 78 ntBASIC2.36□□□□□ -2.03
FOXN3O00409 MIR3945-201ENST00000581853 98 ntBASIC2.36□□□□□ -2.03
FOXN3O00409 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.36□□□□□ -2.03
FOXN3O00409 AC022441.3-201ENST00000605737 136 ntBASIC2.36□□□□□ -2.03
FOXN3O00409 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.35□□□□□ -2.03
FOXN3O00409 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
FOXN3O00409 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
FOXN3O00409 MIRLET7G-201ENST00000362280 84 ntBASIC2.35□□□□□ -2.03
FOXN3O00409 snoU2-30.2-201ENST00000362805 70 ntBASIC2.35□□□□□ -2.03
FOXN3O00409 RNU1-96P-201ENST00000364163 162 ntBASIC2.35□□□□□ -2.03
FOXN3O00409 RNU6-326P-201ENST00000365480 107 ntBASIC2.35□□□□□ -2.03
FOXN3O00409 RPL23AP36-201ENST00000413895 458 ntBASIC2.35□□□□□ -2.03
FOXN3O00409 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
FOXN3O00409 PIGPP3-201ENST00000425307 415 ntBASIC2.35□□□□□ -2.03
FOXN3O00409 RPS27P22-201ENST00000478056 241 ntBASIC2.35□□□□□ -2.03
FOXN3O00409 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.35□□□□□ -2.03
FOXN3O00409 RNU4-71P-201ENST00000516258 113 ntBASIC2.35□□□□□ -2.03
FOXN3O00409 RNU6-1146P-201ENST00000516282 102 ntBASIC2.35□□□□□ -2.03
FOXN3O00409 Y_RNA.679-201ENST00000516416 91 ntBASIC2.35□□□□□ -2.03
FOXN3O00409 AC024405.2-202ENST00000532731 184 ntBASIC2.35□□□□□ -2.03
FOXN3O00409 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.35□□□□□ -2.03
FOXN3O00409 MIR5094-201ENST00000578766 85 ntBASIC2.35□□□□□ -2.03
FOXN3O00409 MIR5002-201ENST00000584713 97 ntBASIC2.35□□□□□ -2.03
FOXN3O00409 U6.115-201ENST00000636045 103 ntBASIC2.35□□□□□ -2.03
FOXN3O00409 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
FOXN3O00409 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
FOXN3O00409 AL359851.1-201ENST00000569460 4997 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.34□□□□□ -2.03
FOXN3O00409 Y_RNA.150-201ENST00000363562 102 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 Y_RNA.200-201ENST00000364018 102 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 Y_RNA.590-201ENST00000410140 107 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 RNU2-54P-201ENST00000410299 190 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 RNU6-1186P-201ENST00000410429 97 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 RNU6-1199P-201ENST00000411249 104 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 RNU2-64P-201ENST00000411315 191 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 RNA5SP57-201ENST00000459463 123 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 RNA5SP200-201ENST00000516360 103 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 RNU2-12P-201ENST00000517216 168 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.34□□□□□ -2.03
FOXN3O00409 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.34□□□□□ -2.03
FOXN3O00409 AL162424.1-201ENST00000602325 221 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 AC005828.6-201ENST00000606610 232 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 U2.15-201ENST00000611544 191 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 U2.16-201ENST00000613119 191 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 U2.12-201ENST00000613778 191 ntBASIC2.34□□□□□ -2.03
FOXN3O00409 U2.20-201ENST00000613956 192 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 156.2 ms