Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 AL138827.1-201ENST00000402666 306 ntBASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 AL161788.1-201ENST00000441805 169 ntBASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 RN7SL442P-201ENST00000473804 320 ntBASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 RNA5SP20-201ENST00000515976 84 ntBASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 AC025647.1-201ENST00000517879 253 ntBASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 MIR4524B-201ENST00000581569 115 ntBASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 AC005972.2-201ENST00000604690 348 ntBASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.62□□□□□ -1.83
CCDC87Q9NVE4 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 RNY3P5-201ENST00000384127 102 ntBASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 Y_RNA.568-201ENST00000384742 113 ntBASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 MIR504-201ENST00000385065 83 ntBASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 SNORA36B-201ENST00000410438 131 ntBASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 AL162725.1-201ENST00000435405 301 ntBASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 AC117454.1-201ENST00000491120 168 ntBASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 CKS1BP2-201ENST00000497342 240 ntBASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 RNU6-1007P-201ENST00000516586 107 ntBASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 MIR4769-201ENST00000584126 77 ntBASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 AC080128.1-201ENST00000474389 1917 ntBASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC87Q9NVE4 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 Y_RNA.172-201ENST00000363765 102 ntBASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 RNU6-151P-201ENST00000364158 107 ntBASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 RNU6-1240P-201ENST00000365155 104 ntBASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 RNU6-407P-201ENST00000365280 104 ntBASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 RNU6-805P-201ENST00000365643 106 ntBASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 FO393413.1-201ENST00000402892 195 ntBASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 RNA5SP293-201ENST00000410527 113 ntBASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 RNU2-32P-201ENST00000411193 191 ntBASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 AC016717.1-201ENST00000448918 286 ntBASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 HMGN2P18-201ENST00000450680 270 ntBASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 snoU13.26-201ENST00000459452 105 ntBASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 SCARNA8-201ENST00000515924 131 ntBASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 RNA5SP24-201ENST00000516478 95 ntBASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 RNA5SP490-201ENST00000517141 136 ntBASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 AC023043.3-201ENST00000593113 385 ntBASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CCDC87Q9NVE4 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC87Q9NVE4 SNORD56.3-201ENST00000363507 71 ntBASIC3.59□□□□□ -1.83
CCDC87Q9NVE4 Y_RNA.229-201ENST00000364347 113 ntBASIC3.59□□□□□ -1.83
CCDC87Q9NVE4 Y_RNA.337-201ENST00000365312 102 ntBASIC3.59□□□□□ -1.83
CCDC87Q9NVE4 RNU6-1117P-201ENST00000384525 104 ntBASIC3.59□□□□□ -1.83
CCDC87Q9NVE4 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
CCDC87Q9NVE4 AC090515.1-201ENST00000465295 476 ntBASIC3.59□□□□□ -1.83
CCDC87Q9NVE4 RN7SL633P-201ENST00000488974 297 ntBASIC3.59□□□□□ -1.83
CCDC87Q9NVE4 SNORD116-25-201ENST00000516517 92 ntBASIC3.59□□□□□ -1.83
CCDC87Q9NVE4 AC127455.1-201ENST00000565496 145 ntBASIC3.59□□□□□ -1.83
CCDC87Q9NVE4 DNAJC19P2-201ENST00000593340 302 ntBASIC3.59□□□□□ -1.83
CCDC87Q9NVE4 POLR3GP1-201ENST00000594073 261 ntBASIC3.59□□□□□ -1.83
CCDC87Q9NVE4 AL356280.1-201ENST00000603614 379 ntBASIC3.59□□□□□ -1.83
CCDC87Q9NVE4 AC064859.1-201ENST00000624741 174 ntBASIC3.59□□□□□ -1.83
CCDC87Q9NVE4 MIR1248-201ENST00000629190 106 ntBASIC3.59□□□□□ -1.83
CCDC87Q9NVE4 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC87Q9NVE4 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC87Q9NVE4 RNU6-418P-201ENST00000384035 107 ntBASIC3.58□□□□□ -1.84
CCDC87Q9NVE4 Y_RNA.572-201ENST00000384757 98 ntBASIC3.58□□□□□ -1.84
CCDC87Q9NVE4 RNA5SP21-201ENST00000410917 96 ntBASIC3.58□□□□□ -1.84
CCDC87Q9NVE4 AL137159.1-201ENST00000452808 512 ntBASIC3.58□□□□□ -1.84
CCDC87Q9NVE4 AC245047.8-201ENST00000456455 284 ntBASIC3.58□□□□□ -1.84
CCDC87Q9NVE4 SNORA64.4-201ENST00000516632 81 ntBASIC3.58□□□□□ -1.84
CCDC87Q9NVE4 RNU6-453P-201ENST00000516819 85 ntBASIC3.58□□□□□ -1.84
CCDC87Q9NVE4 SNORA48.11-201ENST00000517015 89 ntBASIC3.58□□□□□ -1.84
CCDC87Q9NVE4 MIR6817-201ENST00000615588 66 ntBASIC3.58□□□□□ -1.84
CCDC87Q9NVE4 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.58□□□□□ -1.84
CCDC87Q9NVE4 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
CCDC87Q9NVE4 CENPCP1-201ENST00000533085 2578 ntBASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 RNA5SP68-201ENST00000363885 119 ntBASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 RNU6-728P-201ENST00000365375 104 ntBASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 SNORD116-13-201ENST00000384408 92 ntBASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 RNU2-63P-201ENST00000410792 194 ntBASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 AL357134.1-201ENST00000445848 426 ntBASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 AL121914.1-201ENST00000450188 156 ntBASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 AC092185.1-201ENST00000491371 97 ntBASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 AC023141.11-201ENST00000508864 202 ntBASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 RNU6-965P-201ENST00000516721 96 ntBASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 MIR548X2-201ENST00000579776 100 ntBASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 SNORD53-201ENST00000579969 78 ntBASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 AC090115.4-201ENST00000609970 188 ntBASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 AC091895.1-201ENST00000624494 256 ntBASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC87Q9NVE4 RNU6-674P-201ENST00000363831 107 ntBASIC3.56□□□□□ -1.84
CCDC87Q9NVE4 RNU6-131P-201ENST00000391144 107 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms