Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RNU7-30P-201ENST00000516835 62 ntBASIC1.73□□□□□ -2.13
CHMP4AQ9BY43 MTND4LP26-201ENST00000518144 282 ntBASIC1.73□□□□□ -2.13
CHMP4AQ9BY43 U6atac.1-201ENST00000616025 117 ntBASIC1.73□□□□□ -2.13
CHMP4AQ9BY43 PISRT1.1-201ENST00000616930 107 ntBASIC1.73□□□□□ -2.13
CHMP4AQ9BY43 AL353770.2-201ENST00000620024 78 ntBASIC1.73□□□□□ -2.13
CHMP4AQ9BY43 RNU1-124P-201ENST00000363861 145 ntBASIC1.72□□□□□ -2.13
CHMP4AQ9BY43 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
CHMP4AQ9BY43 RNU6-1001P-201ENST00000411265 100 ntBASIC1.72□□□□□ -2.13
CHMP4AQ9BY43 MTND3P10-201ENST00000450967 341 ntBASIC1.72□□□□□ -2.13
CHMP4AQ9BY43 RPS23P4-201ENST00000487908 423 ntBASIC1.72□□□□□ -2.13
CHMP4AQ9BY43 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.72□□□□□ -2.13
CHMP4AQ9BY43 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.72□□□□□ -2.13
CHMP4AQ9BY43 AL359821.1-201ENST00000605519 182 ntBASIC1.72□□□□□ -2.13
CHMP4AQ9BY43 CASC19-280ENST00000642102 1351 ntBASIC1.72□□□□□ -2.13
CHMP4AQ9BY43 RNU6-767P-201ENST00000384132 107 ntBASIC1.71□□□□□ -2.14
CHMP4AQ9BY43 Y_RNA.619-201ENST00000410951 90 ntBASIC1.71□□□□□ -2.14
CHMP4AQ9BY43 SNORD65B-201ENST00000459126 73 ntBASIC1.71□□□□□ -2.14
CHMP4AQ9BY43 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.71□□□□□ -2.14
CHMP4AQ9BY43 RNU6-1053P-201ENST00000515930 101 ntBASIC1.71□□□□□ -2.14
CHMP4AQ9BY43 MIR5701-3-201ENST00000578890 82 ntBASIC1.71□□□□□ -2.14
CHMP4AQ9BY43 MIR5701-1-201ENST00000585138 82 ntBASIC1.71□□□□□ -2.14
CHMP4AQ9BY43 HSPE1P19-201ENST00000603327 295 ntBASIC1.71□□□□□ -2.14
CHMP4AQ9BY43 AL022345.2-201ENST00000606307 135 ntBASIC1.71□□□□□ -2.14
CHMP4AQ9BY43 GHRLOS.1-201ENST00000610995 70 ntBASIC1.71□□□□□ -2.14
CHMP4AQ9BY43 MIR5701-2-201ENST00000615634 82 ntBASIC1.71□□□□□ -2.14
CHMP4AQ9BY43 Y_RNA.88-201ENST00000363029 99 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 RNY1P10-201ENST00000363268 113 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 Y_RNA.160-201ENST00000363677 92 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 RNU6-879P-201ENST00000364328 108 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 Y_RNA.364-201ENST00000365532 101 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 Y_RNA.482-201ENST00000384377 111 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 SNORD12-201ENST00000391002 90 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 MTCYBP10-201ENST00000424905 650 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 RAB28P5-201ENST00000427490 651 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 AC092423.1-201ENST00000430165 186 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 UQCRBP2-201ENST00000447827 297 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 RNU1-123P-201ENST00000458950 160 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 AC074133.1-201ENST00000515696 183 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 AC023157.2-201ENST00000540596 141 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 MIR3660-201ENST00000584845 100 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 BX284668.6-201ENST00000606899 438 ntBASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.7□□□□□ -2.14
CHMP4AQ9BY43 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
CHMP4AQ9BY43 RNU6-199P-201ENST00000362954 107 ntBASIC1.69□□□□□ -2.14
CHMP4AQ9BY43 Y_RNA.339-201ENST00000365325 102 ntBASIC1.69□□□□□ -2.14
CHMP4AQ9BY43 RNU6-876P-201ENST00000391295 104 ntBASIC1.69□□□□□ -2.14
CHMP4AQ9BY43 FGF7P6-202ENST00000451282 293 ntBASIC1.69□□□□□ -2.14
CHMP4AQ9BY43 AC097462.1-201ENST00000514125 324 ntBASIC1.69□□□□□ -2.14
CHMP4AQ9BY43 RNA5SP404-201ENST00000517118 132 ntBASIC1.69□□□□□ -2.14
CHMP4AQ9BY43 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.69□□□□□ -2.14
CHMP4AQ9BY43 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.69□□□□□ -2.14
CHMP4AQ9BY43 AC125232.2-201ENST00000592457 143 ntBASIC1.69□□□□□ -2.14
CHMP4AQ9BY43 AL021879.1-201ENST00000611756 288 ntBASIC1.69□□□□□ -2.14
CHMP4AQ9BY43 AC027335.2-201ENST00000624030 375 ntBASIC1.69□□□□□ -2.14
CHMP4AQ9BY43 AL391516.1-201ENST00000554380 2449 ntBASIC1.68□□□□□ -2.14
CHMP4AQ9BY43 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CHMP4AQ9BY43 Y_RNA.404-201ENST00000383978 102 ntBASIC1.68□□□□□ -2.14
CHMP4AQ9BY43 SNORA40.6-201ENST00000391153 128 ntBASIC1.68□□□□□ -2.14
CHMP4AQ9BY43 EIF1P2-201ENST00000428233 350 ntBASIC1.68□□□□□ -2.14
CHMP4AQ9BY43 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.68□□□□□ -2.14
CHMP4AQ9BY43 SCARNA16.2-201ENST00000516520 172 ntBASIC1.68□□□□□ -2.14
CHMP4AQ9BY43 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.68□□□□□ -2.14
CHMP4AQ9BY43 AC092794.1-201ENST00000612734 582 ntBASIC1.68□□□□□ -2.14
CHMP4AQ9BY43 MIR6079-201ENST00000635807 62 ntBASIC1.68□□□□□ -2.14
CHMP4AQ9BY43 MIR337-201ENST00000362281 93 ntBASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 RNU6-874P-201ENST00000362390 105 ntBASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 RNA5SP361-201ENST00000362686 118 ntBASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 Y_RNA.358-201ENST00000365491 99 ntBASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 RNU6-505P-201ENST00000384427 107 ntBASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 Y_RNA.557-201ENST00000384680 107 ntBASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 AC010469.2-201ENST00000496412 480 ntBASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 RNU2-56P-201ENST00000516826 190 ntBASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 AC022868.1-201ENST00000517767 391 ntBASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 AC105029.1-201ENST00000520250 669 ntBASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 AC073413.2-201ENST00000604332 360 ntBASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 AL157834.3-201ENST00000615543 103 ntBASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 MIR7974-201ENST00000615835 79 ntBASIC1.67□□□□□ -2.14
CHMP4AQ9BY43 Y_RNA.248-201ENST00000364501 109 ntBASIC1.66□□□□□ -2.14
CHMP4AQ9BY43 MIR329-1-201ENST00000385028 80 ntBASIC1.66□□□□□ -2.14
CHMP4AQ9BY43 SNORA75.4-201ENST00000391278 119 ntBASIC1.66□□□□□ -2.14
CHMP4AQ9BY43 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.66□□□□□ -2.14
CHMP4AQ9BY43 RNU6-1278P-201ENST00000516130 107 ntBASIC1.66□□□□□ -2.14
CHMP4AQ9BY43 RNU6-1213P-201ENST00000517075 94 ntBASIC1.66□□□□□ -2.14
CHMP4AQ9BY43 RNU7-172P-201ENST00000517125 64 ntBASIC1.66□□□□□ -2.14
CHMP4AQ9BY43 SNORA70.22-201ENST00000517160 124 ntBASIC1.66□□□□□ -2.14
CHMP4AQ9BY43 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.66□□□□□ -2.14
CHMP4AQ9BY43 AL358944.1-201ENST00000528537 144 ntBASIC1.66□□□□□ -2.14
CHMP4AQ9BY43 AP002004.2-201ENST00000531656 154 ntBASIC1.66□□□□□ -2.14
CHMP4AQ9BY43 AC090049.2-201ENST00000550377 109 ntBASIC1.66□□□□□ -2.14
CHMP4AQ9BY43 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.66□□□□□ -2.14
CHMP4AQ9BY43 SNORD114-7-201ENST00000362520 77 ntBASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 RNU6-392P-201ENST00000364926 101 ntBASIC1.65□□□□□ -2.15
CHMP4AQ9BY43 Y_RNA.327-201ENST00000365201 102 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms