Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC006001.4-201ENST00000622243 395 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 AC022513.1-201ENST00000624512 117 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 MIR338-201ENST00000636369 67 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.55□□□□□ -2.16
CCDC28BQ9BUN5 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 SNORD114-7-201ENST00000362520 77 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 RNU6-626P-201ENST00000363354 107 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.326-201ENST00000365176 113 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.389-201ENST00000383924 113 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 RNU6-639P-201ENST00000384074 107 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 RNU6-20P-201ENST00000384106 107 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.439-201ENST00000384119 94 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.471-201ENST00000384312 102 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 RNA5SP212-201ENST00000391223 107 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 AL117342.1-201ENST00000404861 406 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 MIR1253-201ENST00000408273 105 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 MIR1252-201ENST00000408861 65 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 RNU6-955P-201ENST00000410497 104 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 CST2P1-201ENST00000425770 87 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 RNU6-1041P-201ENST00000516254 102 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.715-201ENST00000517082 110 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 AP002001.1-203ENST00000534002 267 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 AL160236.1-201ENST00000556317 195 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 MIR4255-201ENST00000579351 72 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 MIR4713-201ENST00000582691 75 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 AC005176.2-201ENST00000596933 147 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.54□□□□□ -2.16
CCDC28BQ9BUN5 SNORA72.2-201ENST00000365028 127 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.455-201ENST00000384230 98 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 SNORD63-201ENST00000384262 68 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 RNA5SP501-201ENST00000410990 112 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 RNU5A-5P-201ENST00000411054 116 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 RNA5SP508-201ENST00000411327 119 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 HMGN2P34-201ENST00000437647 269 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 AC010598.1-201ENST00000510378 103 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 RNU6-250P-201ENST00000516958 103 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 AP003072.1-201ENST00000531740 145 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 MIR4680-201ENST00000580906 66 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 MIR4423-201ENST00000580922 80 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 AC005828.6-201ENST00000606610 232 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 AC103810.8-201ENST00000607347 118 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.812-201ENST00000610788 101 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.784-201ENST00000613803 101 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 AC040896.1-201ENST00000613819 479 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 AC011476.5-201ENST00000615594 130 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 AC004467.1-201ENST00000615678 330 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.787-201ENST00000616522 101 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.780-201ENST00000617336 101 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 Y_RNA.801-201ENST00000619005 101 ntBASIC1.53□□□□□ -2.16
CCDC28BQ9BUN5 MIR126-201ENST00000362291 85 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-454P-201ENST00000364292 107 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 Y_RNA.243-201ENST00000364481 109 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 Y_RNA.287-201ENST00000364853 94 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 AL590004.1-201ENST00000405321 300 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 AC099677.2-201ENST00000436385 175 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 AC005002.2-201ENST00000438228 269 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 AC073910.1-201ENST00000445047 438 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 SNORD65B-201ENST00000459126 73 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 YWHAEP4-201ENST00000505390 198 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 RNU2-12P-201ENST00000517216 168 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 AC024995.1-201ENST00000523014 93 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 AL137100.2-201ENST00000555786 315 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 MIR4648-201ENST00000580107 72 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 AL355297.3-201ENST00000604082 446 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 AC069114.2-201ENST00000604699 304 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 AL021879.1-201ENST00000611756 288 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 U6.115-201ENST00000636045 103 ntBASIC1.52□□□□□ -2.17
CCDC28BQ9BUN5 MIR449A-201ENST00000362113 91 ntBASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-862P-201ENST00000362804 105 ntBASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-271P-201ENST00000363858 105 ntBASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 RNU1-96P-201ENST00000364163 162 ntBASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 Y_RNA.276-201ENST00000364732 109 ntBASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 Y_RNA.570-201ENST00000384750 101 ntBASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 MIR583-201ENST00000384846 75 ntBASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 SNORA40.18-201ENST00000391200 128 ntBASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 RNU6-985P-201ENST00000410182 104 ntBASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 RNU2-54P-201ENST00000410299 190 ntBASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 AC010154.1-201ENST00000425857 269 ntBASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 SUB1P4-201ENST00000566062 339 ntBASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 AC006504.6-201ENST00000590142 199 ntBASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 AC006380.1-201ENST00000603598 186 ntBASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 AC022441.3-201ENST00000605737 136 ntBASIC1.51□□□□□ -2.17
CCDC28BQ9BUN5 Y_RNA.152-201ENST00000363578 100 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 194.7 ms