Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.37□□□□□ -1.87
USP48Q86UV5 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
USP48Q86UV5 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
USP48Q86UV5 RNU6-704P-201ENST00000364162 103 ntBASIC3.36□□□□□ -1.87
USP48Q86UV5 RNA5SP125-201ENST00000364843 120 ntBASIC3.36□□□□□ -1.87
USP48Q86UV5 RNU6-1235P-201ENST00000384559 107 ntBASIC3.36□□□□□ -1.87
USP48Q86UV5 MIR9-1-201ENST00000385198 89 ntBASIC3.36□□□□□ -1.87
USP48Q86UV5 SNORD88.1-201ENST00000408684 91 ntBASIC3.36□□□□□ -1.87
USP48Q86UV5 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.36□□□□□ -1.87
USP48Q86UV5 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.36□□□□□ -1.87
USP48Q86UV5 AL137159.1-201ENST00000452808 512 ntBASIC3.36□□□□□ -1.87
USP48Q86UV5 RNU6-498P-201ENST00000459468 107 ntBASIC3.36□□□□□ -1.87
USP48Q86UV5 RNU2-34P-201ENST00000516534 121 ntBASIC3.36□□□□□ -1.87
USP48Q86UV5 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC3.36□□□□□ -1.87
USP48Q86UV5 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.36□□□□□ -1.87
USP48Q86UV5 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.35□□□□□ -1.87
USP48Q86UV5 Y_RNA.8-201ENST00000362353 102 ntBASIC3.35□□□□□ -1.87
USP48Q86UV5 RNU6-1272P-201ENST00000362776 107 ntBASIC3.35□□□□□ -1.87
USP48Q86UV5 Y_RNA.262-201ENST00000364641 102 ntBASIC3.35□□□□□ -1.87
USP48Q86UV5 Y_RNA.361-201ENST00000365515 120 ntBASIC3.35□□□□□ -1.87
USP48Q86UV5 SNORD14D-201ENST00000384390 87 ntBASIC3.35□□□□□ -1.87
USP48Q86UV5 RNU6ATAC19P-201ENST00000408096 110 ntBASIC3.35□□□□□ -1.87
USP48Q86UV5 AC016717.1-201ENST00000448918 286 ntBASIC3.35□□□□□ -1.87
USP48Q86UV5 snoU13.15-201ENST00000459407 104 ntBASIC3.35□□□□□ -1.87
USP48Q86UV5 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC3.35□□□□□ -1.87
USP48Q86UV5 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.35□□□□□ -1.87
USP48Q86UV5 PRELID2P1-201ENST00000552837 301 ntBASIC3.35□□□□□ -1.87
USP48Q86UV5 AC009127.3-201ENST00000570531 403 ntBASIC3.35□□□□□ -1.87
USP48Q86UV5 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.35□□□□□ -1.87
USP48Q86UV5 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.34□□□□□ -1.87
USP48Q86UV5 RNU6-801P-201ENST00000364087 105 ntBASIC3.34□□□□□ -1.87
USP48Q86UV5 RNU6-1180P-201ENST00000364935 107 ntBASIC3.34□□□□□ -1.87
USP48Q86UV5 RNU6-418P-201ENST00000384035 107 ntBASIC3.34□□□□□ -1.87
USP48Q86UV5 MIR613-201ENST00000385248 95 ntBASIC3.34□□□□□ -1.87
USP48Q86UV5 SNORA3.2-201ENST00000408221 125 ntBASIC3.34□□□□□ -1.87
USP48Q86UV5 RNU2-48P-201ENST00000410694 191 ntBASIC3.34□□□□□ -1.87
USP48Q86UV5 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.34□□□□□ -1.87
USP48Q86UV5 AC092427.1-202ENST00000430569 476 ntBASIC3.34□□□□□ -1.87
USP48Q86UV5 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.34□□□□□ -1.87
USP48Q86UV5 TMSB4XP3-201ENST00000445144 114 ntBASIC3.34□□□□□ -1.87
USP48Q86UV5 U8.19-201ENST00000459095 133 ntBASIC3.34□□□□□ -1.87
USP48Q86UV5 RNU6-991P-201ENST00000516168 107 ntBASIC3.34□□□□□ -1.87
USP48Q86UV5 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.34□□□□□ -1.87
USP48Q86UV5 AC108706.1-201ENST00000611053 297 ntBASIC3.34□□□□□ -1.87
USP48Q86UV5 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
USP48Q86UV5 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
USP48Q86UV5 AL161431.1-201ENST00000618966 4205 ntBASIC3.33□□□□□ -1.88
USP48Q86UV5 SNORD56.5-201ENST00000364281 72 ntBASIC3.33□□□□□ -1.88
USP48Q86UV5 Y_RNA.291-201ENST00000364886 113 ntBASIC3.33□□□□□ -1.88
USP48Q86UV5 SNORD50.2-201ENST00000365465 70 ntBASIC3.33□□□□□ -1.88
USP48Q86UV5 AC008134.1-201ENST00000420943 193 ntBASIC3.33□□□□□ -1.88
USP48Q86UV5 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.33□□□□□ -1.88
USP48Q86UV5 AC093259.1-201ENST00000509755 300 ntBASIC3.33□□□□□ -1.88
USP48Q86UV5 RNU6-667P-201ENST00000517186 102 ntBASIC3.33□□□□□ -1.88
USP48Q86UV5 AP005660.1-201ENST00000522972 293 ntBASIC3.33□□□□□ -1.88
USP48Q86UV5 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
USP48Q86UV5 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.33□□□□□ -1.88
USP48Q86UV5 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.32□□□□□ -1.88
USP48Q86UV5 SNORD114-7-201ENST00000362520 77 ntBASIC3.32□□□□□ -1.88
USP48Q86UV5 Y_RNA.332-201ENST00000365271 113 ntBASIC3.32□□□□□ -1.88
USP48Q86UV5 RNU6-1130P-201ENST00000365434 107 ntBASIC3.32□□□□□ -1.88
USP48Q86UV5 Y_RNA.571-201ENST00000384753 98 ntBASIC3.32□□□□□ -1.88
USP48Q86UV5 MIR512-1-201ENST00000384913 84 ntBASIC3.32□□□□□ -1.88
USP48Q86UV5 AC123900.1-201ENST00000420390 96 ntBASIC3.32□□□□□ -1.88
USP48Q86UV5 BTF3P11-201ENST00000426582 477 ntBASIC3.32□□□□□ -1.88
USP48Q86UV5 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.32□□□□□ -1.88
USP48Q86UV5 SNORA31.26-201ENST00000517250 137 ntBASIC3.32□□□□□ -1.88
USP48Q86UV5 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.32□□□□□ -1.88
USP48Q86UV5 U4atac.1-201ENST00000618345 95 ntBASIC3.32□□□□□ -1.88
USP48Q86UV5 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
USP48Q86UV5 RNU6-81P-201ENST00000365608 104 ntBASIC3.31□□□□□ -1.88
USP48Q86UV5 RNU6-763P-201ENST00000390865 106 ntBASIC3.31□□□□□ -1.88
USP48Q86UV5 Y_RNA.580-201ENST00000391004 95 ntBASIC3.31□□□□□ -1.88
USP48Q86UV5 RNA5SP21-201ENST00000410917 96 ntBASIC3.31□□□□□ -1.88
USP48Q86UV5 AL357134.1-201ENST00000445848 426 ntBASIC3.31□□□□□ -1.88
USP48Q86UV5 AC010531.2-201ENST00000465012 153 ntBASIC3.31□□□□□ -1.88
USP48Q86UV5 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC3.31□□□□□ -1.88
USP48Q86UV5 AC018868.1-201ENST00000491307 315 ntBASIC3.31□□□□□ -1.88
USP48Q86UV5 RNU6-56P-201ENST00000516986 93 ntBASIC3.31□□□□□ -1.88
USP48Q86UV5 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.31□□□□□ -1.88
USP48Q86UV5 AC025754.2-201ENST00000606491 432 ntBASIC3.31□□□□□ -1.88
USP48Q86UV5 AC004832.4-201ENST00000608952 331 ntBASIC3.31□□□□□ -1.88
USP48Q86UV5 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC3.31□□□□□ -1.88
USP48Q86UV5 ZNF658B-202ENST00000615961 3375 ntBASIC3.31□□□□□ -1.88
USP48Q86UV5 AL159152.1-201ENST00000635019 2587 ntBASIC3.3□□□□□ -1.88
USP48Q86UV5 RNU6-271P-201ENST00000363858 105 ntBASIC3.3□□□□□ -1.88
USP48Q86UV5 SNORA25B-201ENST00000365507 128 ntBASIC3.3□□□□□ -1.88
USP48Q86UV5 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
USP48Q86UV5 SNORA20B-201ENST00000384220 132 ntBASIC3.3□□□□□ -1.88
USP48Q86UV5 MIR592-201ENST00000384959 97 ntBASIC3.3□□□□□ -1.88
USP48Q86UV5 MIR873-201ENST00000401120 77 ntBASIC3.3□□□□□ -1.88
USP48Q86UV5 RNU6-855P-201ENST00000410395 104 ntBASIC3.3□□□□□ -1.88
USP48Q86UV5 UBBP3-201ENST00000445497 241 ntBASIC3.3□□□□□ -1.88
USP48Q86UV5 AC104389.3-201ENST00000445629 235 ntBASIC3.3□□□□□ -1.88
USP48Q86UV5 RN7SL297P-201ENST00000483161 293 ntBASIC3.3□□□□□ -1.88
USP48Q86UV5 AC010598.1-201ENST00000510378 103 ntBASIC3.3□□□□□ -1.88
USP48Q86UV5 AC096725.1-201ENST00000514266 313 ntBASIC3.3□□□□□ -1.88
USP48Q86UV5 AC025647.1-201ENST00000517879 253 ntBASIC3.3□□□□□ -1.88
USP48Q86UV5 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.3□□□□□ -1.88
USP48Q86UV5 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms