Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC024995.1-201ENST00000523014 93 ntBASIC2.86□□□□□ -1.95
CCDC144BQ3MJ40 AC007229.1-201ENST00000590455 412 ntBASIC2.86□□□□□ -1.95
CCDC144BQ3MJ40 AL359075.3-201ENST00000613288 217 ntBASIC2.86□□□□□ -1.95
CCDC144BQ3MJ40 U6.73-201ENST00000619194 103 ntBASIC2.86□□□□□ -1.95
CCDC144BQ3MJ40 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC144BQ3MJ40 RNU1-96P-201ENST00000364163 162 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 SNORD114-30-201ENST00000364448 72 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 Y_RNA.286-201ENST00000364813 102 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 Y_RNA.287-201ENST00000364853 94 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 Y_RNA.329-201ENST00000365209 107 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 RNU6-407P-201ENST00000365280 104 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 RNU6-326P-201ENST00000365480 107 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 Y_RNA.376-201ENST00000365638 108 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 Y_RNA.461-201ENST00000384263 103 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 MIR597-201ENST00000384968 97 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 AL117342.1-201ENST00000404861 406 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 RNU6-1203P-201ENST00000410703 110 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 HSPE1P13-201ENST00000451143 297 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 snoU13.26-201ENST00000459452 105 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 HMGB3P3-201ENST00000510526 400 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 RNA5SP402-201ENST00000517148 110 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 MIR4438-201ENST00000585271 93 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 U4.1-201ENST00000620349 87 ntBASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC144BQ3MJ40 RNU6-862P-201ENST00000362804 105 ntBASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 Y_RNA.136-201ENST00000363444 102 ntBASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 Y_RNA.144-201ENST00000363521 113 ntBASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 RNU6-463P-201ENST00000384340 107 ntBASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 Y_RNA.512-201ENST00000384518 102 ntBASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 MIR215-201ENST00000384858 110 ntBASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 RPS26P55-201ENST00000471178 356 ntBASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 RPS29P21-201ENST00000496272 170 ntBASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 RNU1-142P-201ENST00000516682 145 ntBASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 RNU2-31P-201ENST00000516954 155 ntBASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 RNU6-570P-201ENST00000517051 105 ntBASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 AC027419.1-201ENST00000522976 328 ntBASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 AC012640.5-201ENST00000623897 319 ntBASIC2.84□□□□□ -1.95
CCDC144BQ3MJ40 AC010615.1-201ENST00000594254 1764 ntBASIC2.84□□□□□ -1.96
CCDC144BQ3MJ40 RNU6-505P-201ENST00000384427 107 ntBASIC2.83□□□□□ -1.96
CCDC144BQ3MJ40 RNU6-102P-201ENST00000384485 104 ntBASIC2.83□□□□□ -1.96
CCDC144BQ3MJ40 RNA5SP323-201ENST00000391094 133 ntBASIC2.83□□□□□ -1.96
CCDC144BQ3MJ40 RNU2-61P-201ENST00000411069 191 ntBASIC2.83□□□□□ -1.96
CCDC144BQ3MJ40 RNA5SP450-201ENST00000411206 102 ntBASIC2.83□□□□□ -1.96
CCDC144BQ3MJ40 RPL23AP3-201ENST00000453844 468 ntBASIC2.83□□□□□ -1.96
CCDC144BQ3MJ40 snoU13.15-201ENST00000459407 104 ntBASIC2.83□□□□□ -1.96
CCDC144BQ3MJ40 AC055731.1-201ENST00000474387 401 ntBASIC2.83□□□□□ -1.96
CCDC144BQ3MJ40 RNU6-966P-201ENST00000516479 104 ntBASIC2.83□□□□□ -1.96
CCDC144BQ3MJ40 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.83□□□□□ -1.96
CCDC144BQ3MJ40 AC069114.2-201ENST00000604699 304 ntBASIC2.83□□□□□ -1.96
CCDC144BQ3MJ40 7SK.10-201ENST00000621414 298 ntBASIC2.83□□□□□ -1.96
CCDC144BQ3MJ40 MIR7843-201ENST00000622274 79 ntBASIC2.83□□□□□ -1.96
CCDC144BQ3MJ40 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
CCDC144BQ3MJ40 RNU6-514P-201ENST00000384208 107 ntBASIC2.82□□□□□ -1.96
CCDC144BQ3MJ40 Y_RNA.541-201ENST00000384640 113 ntBASIC2.82□□□□□ -1.96
CCDC144BQ3MJ40 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
CCDC144BQ3MJ40 SNORA48.1-201ENST00000390879 135 ntBASIC2.82□□□□□ -1.96
CCDC144BQ3MJ40 AL359511.1-201ENST00000402970 211 ntBASIC2.82□□□□□ -1.96
CCDC144BQ3MJ40 RN7SKP192-201ENST00000411291 327 ntBASIC2.82□□□□□ -1.96
CCDC144BQ3MJ40 RPS15AP28-201ENST00000435088 386 ntBASIC2.82□□□□□ -1.96
CCDC144BQ3MJ40 UBL5P3-201ENST00000475112 231 ntBASIC2.82□□□□□ -1.96
CCDC144BQ3MJ40 RNU6-1278P-201ENST00000516130 107 ntBASIC2.82□□□□□ -1.96
CCDC144BQ3MJ40 RNU7-99P-201ENST00000516271 62 ntBASIC2.82□□□□□ -1.96
CCDC144BQ3MJ40 AC023157.2-201ENST00000540596 141 ntBASIC2.82□□□□□ -1.96
CCDC144BQ3MJ40 RPL21P9-201ENST00000556149 474 ntBASIC2.82□□□□□ -1.96
CCDC144BQ3MJ40 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC144BQ3MJ40 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
CCDC144BQ3MJ40 AC008555.8-201ENST00000623602 2168 ntBASIC2.81□□□□□ -1.96
CCDC144BQ3MJ40 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
CCDC144BQ3MJ40 Y_RNA.288-201ENST00000364854 92 ntBASIC2.81□□□□□ -1.96
CCDC144BQ3MJ40 MIR568-201ENST00000385036 95 ntBASIC2.81□□□□□ -1.96
CCDC144BQ3MJ40 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.81□□□□□ -1.96
CCDC144BQ3MJ40 RNA5SP425-201ENST00000410336 112 ntBASIC2.81□□□□□ -1.96
CCDC144BQ3MJ40 RPS12P2-201ENST00000439728 269 ntBASIC2.81□□□□□ -1.96
CCDC144BQ3MJ40 AC069257.2-201ENST00000441819 155 ntBASIC2.81□□□□□ -1.96
CCDC144BQ3MJ40 HMGN1P10-201ENST00000474557 553 ntBASIC2.81□□□□□ -1.96
CCDC144BQ3MJ40 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC144BQ3MJ40 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC144BQ3MJ40 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC144BQ3MJ40 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC144BQ3MJ40 MIR335-201ENST00000362173 94 ntBASIC2.8□□□□□ -1.96
CCDC144BQ3MJ40 SNORA25.1-201ENST00000362326 128 ntBASIC2.8□□□□□ -1.96
CCDC144BQ3MJ40 RNU6-1019P-201ENST00000364424 107 ntBASIC2.8□□□□□ -1.96
CCDC144BQ3MJ40 AC097462.1-201ENST00000514125 324 ntBASIC2.8□□□□□ -1.96
CCDC144BQ3MJ40 RNU6-1338P-201ENST00000516328 91 ntBASIC2.8□□□□□ -1.96
CCDC144BQ3MJ40 RNU7-172P-201ENST00000517125 64 ntBASIC2.8□□□□□ -1.96
CCDC144BQ3MJ40 MIR5092-201ENST00000583139 88 ntBASIC2.8□□□□□ -1.96
CCDC144BQ3MJ40 DEFB117-201ENST00000602356 141 ntBASIC2.8□□□□□ -1.96
CCDC144BQ3MJ40 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.8□□□□□ -1.96
CCDC144BQ3MJ40 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC144BQ3MJ40 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
CCDC144BQ3MJ40 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms