Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.23□□□□□ -1.89
LIG3P49916 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
LIG3P49916 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
LIG3P49916 RNU1-22P-201ENST00000363334 158 ntBASIC3.22□□□□□ -1.89
LIG3P49916 Y_RNA.337-201ENST00000365312 102 ntBASIC3.22□□□□□ -1.89
LIG3P49916 RNY3P5-201ENST00000384127 102 ntBASIC3.22□□□□□ -1.89
LIG3P49916 Y_RNA.497-201ENST00000384447 98 ntBASIC3.22□□□□□ -1.89
LIG3P49916 MIR15B-201ENST00000385045 98 ntBASIC3.22□□□□□ -1.89
LIG3P49916 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
LIG3P49916 AP001486.1-201ENST00000463339 476 ntBASIC3.22□□□□□ -1.89
LIG3P49916 RPS29P21-201ENST00000496272 170 ntBASIC3.22□□□□□ -1.89
LIG3P49916 AC097462.1-201ENST00000514125 324 ntBASIC3.22□□□□□ -1.89
LIG3P49916 RN7SKP43-201ENST00000516173 320 ntBASIC3.22□□□□□ -1.89
LIG3P49916 SNORA74D-201ENST00000516404 141 ntBASIC3.22□□□□□ -1.89
LIG3P49916 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.22□□□□□ -1.89
LIG3P49916 MIR2682-201ENST00000580305 110 ntBASIC3.22□□□□□ -1.89
LIG3P49916 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.22□□□□□ -1.89
LIG3P49916 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.21□□□□□ -1.9
LIG3P49916 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
LIG3P49916 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
LIG3P49916 RNA5SP374-201ENST00000362939 125 ntBASIC3.21□□□□□ -1.9
LIG3P49916 RNU6-81P-201ENST00000365608 104 ntBASIC3.21□□□□□ -1.9
LIG3P49916 RNU6-643P-201ENST00000384018 107 ntBASIC3.21□□□□□ -1.9
LIG3P49916 MIR483-201ENST00000385070 76 ntBASIC3.21□□□□□ -1.9
LIG3P49916 AL512604.1-201ENST00000404812 257 ntBASIC3.21□□□□□ -1.9
LIG3P49916 AC006461.1-201ENST00000412637 326 ntBASIC3.21□□□□□ -1.9
LIG3P49916 AL513477.1-202ENST00000417061 214 ntBASIC3.21□□□□□ -1.9
LIG3P49916 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.21□□□□□ -1.9
LIG3P49916 RN7SL863P-201ENST00000462370 296 ntBASIC3.21□□□□□ -1.9
LIG3P49916 RNU7-172P-201ENST00000517125 64 ntBASIC3.21□□□□□ -1.9
LIG3P49916 RNU6-667P-201ENST00000517186 102 ntBASIC3.21□□□□□ -1.9
LIG3P49916 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC3.21□□□□□ -1.9
LIG3P49916 DNAJC19P2-201ENST00000593340 302 ntBASIC3.21□□□□□ -1.9
LIG3P49916 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.21□□□□□ -1.9
LIG3P49916 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.21□□□□□ -1.9
LIG3P49916 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
LIG3P49916 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
LIG3P49916 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
LIG3P49916 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
LIG3P49916 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.2□□□□□ -1.9
LIG3P49916 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.2□□□□□ -1.9
LIG3P49916 RNU6-674P-201ENST00000363831 107 ntBASIC3.2□□□□□ -1.9
LIG3P49916 SNORA72-201ENST00000384339 132 ntBASIC3.2□□□□□ -1.9
LIG3P49916 Y_RNA.568-201ENST00000384742 113 ntBASIC3.2□□□□□ -1.9
LIG3P49916 RNU6-131P-201ENST00000391144 107 ntBASIC3.2□□□□□ -1.9
LIG3P49916 RNA5SP496-201ENST00000391240 109 ntBASIC3.2□□□□□ -1.9
LIG3P49916 AC104332.2-201ENST00000429959 156 ntBASIC3.2□□□□□ -1.9
LIG3P49916 AC091826.1-201ENST00000514065 313 ntBASIC3.2□□□□□ -1.9
LIG3P49916 RNU6-1146P-201ENST00000516282 102 ntBASIC3.2□□□□□ -1.9
LIG3P49916 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.2□□□□□ -1.9
LIG3P49916 MIR3117-201ENST00000584034 78 ntBASIC3.2□□□□□ -1.9
LIG3P49916 AC091895.1-201ENST00000624494 256 ntBASIC3.2□□□□□ -1.9
LIG3P49916 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
LIG3P49916 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
LIG3P49916 AC092435.3-201ENST00000565538 3654 ntBASIC3.19□□□□□ -1.9
LIG3P49916 RNU4-41P-201ENST00000364426 143 ntBASIC3.19□□□□□ -1.9
LIG3P49916 RNA5SP125-201ENST00000364843 120 ntBASIC3.19□□□□□ -1.9
LIG3P49916 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC3.19□□□□□ -1.9
LIG3P49916 MIR592-201ENST00000384959 97 ntBASIC3.19□□□□□ -1.9
LIG3P49916 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.19□□□□□ -1.9
LIG3P49916 MIR548X2-201ENST00000579776 100 ntBASIC3.19□□□□□ -1.9
LIG3P49916 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.19□□□□□ -1.9
LIG3P49916 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.19□□□□□ -1.9
LIG3P49916 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.19□□□□□ -1.9
LIG3P49916 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LIG3P49916 AL161431.1-201ENST00000618966 4205 ntBASIC3.18□□□□□ -1.9
LIG3P49916 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
LIG3P49916 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
LIG3P49916 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.18□□□□□ -1.9
LIG3P49916 AC138915.1-201ENST00000565427 1685 ntBASIC3.18□□□□□ -1.9
LIG3P49916 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
LIG3P49916 Y_RNA.291-201ENST00000364886 113 ntBASIC3.18□□□□□ -1.9
LIG3P49916 RNU6-136P-201ENST00000384663 107 ntBASIC3.18□□□□□ -1.9
LIG3P49916 RN7SKP101-201ENST00000411376 320 ntBASIC3.18□□□□□ -1.9
LIG3P49916 HMGN2P34-201ENST00000437647 269 ntBASIC3.18□□□□□ -1.9
LIG3P49916 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC3.18□□□□□ -1.9
LIG3P49916 AC018868.1-201ENST00000491307 315 ntBASIC3.18□□□□□ -1.9
LIG3P49916 MIR548AI-201ENST00000579940 88 ntBASIC3.18□□□□□ -1.9
LIG3P49916 uc_338.25-201ENST00000613756 156 ntBASIC3.18□□□□□ -1.9
LIG3P49916 U2.20-201ENST00000613956 192 ntBASIC3.18□□□□□ -1.9
LIG3P49916 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.17□□□□□ -1.9
LIG3P49916 MIR340-201ENST00000362125 95 ntBASIC3.17□□□□□ -1.9
LIG3P49916 RNU6-199P-201ENST00000362954 107 ntBASIC3.17□□□□□ -1.9
LIG3P49916 RNU4-11P-201ENST00000365287 132 ntBASIC3.17□□□□□ -1.9
LIG3P49916 MIR513C-201ENST00000401352 84 ntBASIC3.17□□□□□ -1.9
LIG3P49916 SRIP3-201ENST00000413200 219 ntBASIC3.17□□□□□ -1.9
LIG3P49916 AC060773.1-201ENST00000421698 310 ntBASIC3.17□□□□□ -1.9
LIG3P49916 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC3.17□□□□□ -1.9
LIG3P49916 RNU6-561P-201ENST00000516222 102 ntBASIC3.17□□□□□ -1.9
LIG3P49916 RNU6-426P-201ENST00000516464 97 ntBASIC3.17□□□□□ -1.9
LIG3P49916 SNORA31.26-201ENST00000517250 137 ntBASIC3.17□□□□□ -1.9
LIG3P49916 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.17□□□□□ -1.9
LIG3P49916 AL449363.1-201ENST00000617815 186 ntBASIC3.17□□□□□ -1.9
LIG3P49916 U6.73-201ENST00000619194 103 ntBASIC3.17□□□□□ -1.9
LIG3P49916 AL355596.1-201ENST00000565399 3996 ntBASIC3.17□□□□□ -1.9
LIG3P49916 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.17□□□□□ -1.9
LIG3P49916 RNU6-818P-201ENST00000364837 108 ntBASIC3.16□□□□□ -1.9
LIG3P49916 SNORA25B-201ENST00000365507 128 ntBASIC3.16□□□□□ -1.9
LIG3P49916 SNORA7.4-201ENST00000384249 137 ntBASIC3.16□□□□□ -1.9
LIG3P49916 MIR569-201ENST00000385228 96 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms