Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RNA5SP344-201ENST00000411081 104 ntBASIC3.04□□□□□ -1.92
COL6A1P12109 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.04□□□□□ -1.92
COL6A1P12109 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.04□□□□□ -1.92
COL6A1P12109 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.04□□□□□ -1.92
COL6A1P12109 CYP2C59P-201ENST00000457790 269 ntBASIC3.04□□□□□ -1.92
COL6A1P12109 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.04□□□□□ -1.92
COL6A1P12109 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.04□□□□□ -1.92
COL6A1P12109 MIR5739-201ENST00000619803 80 ntBASIC3.04□□□□□ -1.92
COL6A1P12109 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL6A1P12109 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL6A1P12109 Y_RNA.243-201ENST00000364481 109 ntBASIC3.03□□□□□ -1.92
COL6A1P12109 MIR524-201ENST00000385242 87 ntBASIC3.03□□□□□ -1.92
COL6A1P12109 RNA5SP504-201ENST00000410676 117 ntBASIC3.03□□□□□ -1.92
COL6A1P12109 Z98742.3-201ENST00000418637 326 ntBASIC3.03□□□□□ -1.92
COL6A1P12109 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.03□□□□□ -1.92
COL6A1P12109 U8.19-201ENST00000459095 133 ntBASIC3.03□□□□□ -1.92
COL6A1P12109 RN7SL499P-201ENST00000481141 276 ntBASIC3.03□□□□□ -1.92
COL6A1P12109 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.03□□□□□ -1.92
COL6A1P12109 Y_RNA.797-201ENST00000515977 94 ntBASIC3.03□□□□□ -1.92
COL6A1P12109 SNORA70.12-201ENST00000516084 153 ntBASIC3.03□□□□□ -1.92
COL6A1P12109 RN7SKP164-201ENST00000516138 266 ntBASIC3.03□□□□□ -1.92
COL6A1P12109 RNU6-991P-201ENST00000516168 107 ntBASIC3.03□□□□□ -1.92
COL6A1P12109 AC090115.4-201ENST00000609970 188 ntBASIC3.03□□□□□ -1.92
COL6A1P12109 AC013791.1-201ENST00000616619 62 ntBASIC3.03□□□□□ -1.92
COL6A1P12109 AC008873.1-201ENST00000625051 138 ntBASIC3.03□□□□□ -1.92
COL6A1P12109 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
COL6A1P12109 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL6A1P12109 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.03□□□□□ -1.93
COL6A1P12109 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.02□□□□□ -1.93
COL6A1P12109 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.02□□□□□ -1.93
COL6A1P12109 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
COL6A1P12109 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.02□□□□□ -1.93
COL6A1P12109 RNU4-84P-201ENST00000364200 139 ntBASIC3.02□□□□□ -1.93
COL6A1P12109 RNU6-1130P-201ENST00000365434 107 ntBASIC3.02□□□□□ -1.93
COL6A1P12109 MIR512-1-201ENST00000384913 84 ntBASIC3.02□□□□□ -1.93
COL6A1P12109 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.02□□□□□ -1.93
COL6A1P12109 UQCRHP3-201ENST00000451503 251 ntBASIC3.02□□□□□ -1.93
COL6A1P12109 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.02□□□□□ -1.93
COL6A1P12109 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC3.02□□□□□ -1.93
COL6A1P12109 AC015712.3-201ENST00000559380 164 ntBASIC3.02□□□□□ -1.93
COL6A1P12109 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.02□□□□□ -1.93
COL6A1P12109 MIR3684-201ENST00000579779 74 ntBASIC3.02□□□□□ -1.93
COL6A1P12109 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.02□□□□□ -1.93
COL6A1P12109 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.02□□□□□ -1.93
COL6A1P12109 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.02□□□□□ -1.93
COL6A1P12109 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
COL6A1P12109 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
COL6A1P12109 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.01□□□□□ -1.93
COL6A1P12109 RNA5SP289-201ENST00000362332 137 ntBASIC3.01□□□□□ -1.93
COL6A1P12109 RNU6-103P-201ENST00000363686 107 ntBASIC3.01□□□□□ -1.93
COL6A1P12109 RNU6-801P-201ENST00000364087 105 ntBASIC3.01□□□□□ -1.93
COL6A1P12109 RNA5SP125-201ENST00000364843 120 ntBASIC3.01□□□□□ -1.93
COL6A1P12109 Y_RNA.293-201ENST00000364908 93 ntBASIC3.01□□□□□ -1.93
COL6A1P12109 RNU6-275P-201ENST00000364910 107 ntBASIC3.01□□□□□ -1.93
COL6A1P12109 Y_RNA.400-201ENST00000383963 111 ntBASIC3.01□□□□□ -1.93
COL6A1P12109 Y_RNA.488-201ENST00000384403 102 ntBASIC3.01□□□□□ -1.93
COL6A1P12109 RNU6-1117P-201ENST00000384525 104 ntBASIC3.01□□□□□ -1.93
COL6A1P12109 SNORA8.3-201ENST00000384679 139 ntBASIC3.01□□□□□ -1.93
COL6A1P12109 MIR764-201ENST00000390811 85 ntBASIC3.01□□□□□ -1.93
COL6A1P12109 RNU6-855P-201ENST00000410395 104 ntBASIC3.01□□□□□ -1.93
COL6A1P12109 SEPT7P4-201ENST00000437076 306 ntBASIC3.01□□□□□ -1.93
COL6A1P12109 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC3.01□□□□□ -1.93
COL6A1P12109 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL6A1P12109 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3□□□□□ -1.93
COL6A1P12109 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL6A1P12109 MIR26A1-201ENST00000362205 77 ntBASIC3□□□□□ -1.93
COL6A1P12109 RNU6-899P-201ENST00000363947 107 ntBASIC3□□□□□ -1.93
COL6A1P12109 Y_RNA.368-201ENST00000365547 113 ntBASIC3□□□□□ -1.93
COL6A1P12109 SNORA72.4-201ENST00000384174 132 ntBASIC3□□□□□ -1.93
COL6A1P12109 Y_RNA.456-201ENST00000384232 111 ntBASIC3□□□□□ -1.93
COL6A1P12109 SNORA67.2-201ENST00000384300 149 ntBASIC3□□□□□ -1.93
COL6A1P12109 Y_RNA.497-201ENST00000384447 98 ntBASIC3□□□□□ -1.93
COL6A1P12109 MIR29B2-201ENST00000385055 81 ntBASIC3□□□□□ -1.93
COL6A1P12109 SNORA26.5-201ENST00000391215 123 ntBASIC3□□□□□ -1.93
COL6A1P12109 RNU6-381P-201ENST00000391259 108 ntBASIC3□□□□□ -1.93
COL6A1P12109 AL355497.1-201ENST00000406262 551 ntBASIC3□□□□□ -1.93
COL6A1P12109 AC007064.1-201ENST00000412238 351 ntBASIC3□□□□□ -1.93
COL6A1P12109 EBAG9P1-201ENST00000418955 543 ntBASIC3□□□□□ -1.93
COL6A1P12109 RNA5SP282-201ENST00000516355 108 ntBASIC3□□□□□ -1.93
COL6A1P12109 RNU1-104P-201ENST00000517280 175 ntBASIC3□□□□□ -1.93
COL6A1P12109 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC3□□□□□ -1.93
COL6A1P12109 DEFB122-202ENST00000569013 197 ntBASIC3□□□□□ -1.93
COL6A1P12109 AC091895.1-201ENST00000624494 256 ntBASIC3□□□□□ -1.93
COL6A1P12109 U6.115-201ENST00000636045 103 ntBASIC3□□□□□ -1.93
COL6A1P12109 AC108206.1-201ENST00000570186 4159 ntBASIC3□□□□□ -1.93
COL6A1P12109 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
COL6A1P12109 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
COL6A1P12109 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
COL6A1P12109 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
COL6A1P12109 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.99□□□□□ -1.93
COL6A1P12109 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
COL6A1P12109 RNU6-1305P-201ENST00000364353 104 ntBASIC2.99□□□□□ -1.93
COL6A1P12109 Y_RNA.341-201ENST00000365341 102 ntBASIC2.99□□□□□ -1.93
COL6A1P12109 MIR586-201ENST00000385035 97 ntBASIC2.99□□□□□ -1.93
COL6A1P12109 SNORA12-201ENST00000391162 147 ntBASIC2.99□□□□□ -1.93
COL6A1P12109 RPL21P3-201ENST00000395517 478 ntBASIC2.99□□□□□ -1.93
COL6A1P12109 RN7SL75P-201ENST00000461926 281 ntBASIC2.99□□□□□ -1.93
COL6A1P12109 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.99□□□□□ -1.93
COL6A1P12109 AC021269.2-201ENST00000532318 330 ntBASIC2.99□□□□□ -1.93
COL6A1P12109 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 142.7 ms