Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 RNU6-766P-201ENST00000362478 107 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 RNU6-942P-201ENST00000363002 107 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 RNU6-1082P-201ENST00000364574 107 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 RNU6-756P-201ENST00000383997 107 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 RNU6-1124P-201ENST00000384169 107 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 MIR10B-201ENST00000385011 110 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 MIR15B-201ENST00000385045 98 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 MIR888-201ENST00000401186 77 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 AL512604.1-201ENST00000404812 257 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 NDUFS5P4-201ENST00000412983 318 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 AC245047.8-201ENST00000456455 284 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 AC019159.1-201ENST00000605094 187 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 AL357075.2-201ENST00000614906 189 ntBASIC3.98□□□□□ -1.77
COL17A1Q9UMD9 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 Y_RNA.114-201ENST00000363265 113 ntBASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 RNU6-137P-201ENST00000363680 108 ntBASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 RNU5F-3P-201ENST00000363767 117 ntBASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 Y_RNA.393-201ENST00000383936 102 ntBASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 RPS29P6-201ENST00000438196 145 ntBASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 AC243964.1-201ENST00000441814 261 ntBASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 RPS27P1-201ENST00000450552 247 ntBASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 RPL23AP62-201ENST00000463396 453 ntBASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 SNORA40.13-201ENST00000516379 120 ntBASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 RNA5SP395-201ENST00000516567 118 ntBASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 Y_RNA.692-201ENST00000516627 105 ntBASIC3.97□□□□□ -1.77
COL17A1Q9UMD9 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL17A1Q9UMD9 Y_RNA.244-201ENST00000364484 109 ntBASIC3.96□□□□□ -1.78
COL17A1Q9UMD9 Y_RNA.293-201ENST00000364908 93 ntBASIC3.96□□□□□ -1.78
COL17A1Q9UMD9 Y_RNA.328-201ENST00000365208 113 ntBASIC3.96□□□□□ -1.78
COL17A1Q9UMD9 SNORD6-201ENST00000365444 73 ntBASIC3.96□□□□□ -1.78
COL17A1Q9UMD9 Y_RNA.466-201ENST00000384294 113 ntBASIC3.96□□□□□ -1.78
COL17A1Q9UMD9 SNORA8.3-201ENST00000384679 139 ntBASIC3.96□□□□□ -1.78
COL17A1Q9UMD9 MT-TT-201ENST00000387460 66 ntBASIC3.96□□□□□ -1.78
COL17A1Q9UMD9 SNORA75.5-201ENST00000391291 81 ntBASIC3.96□□□□□ -1.78
COL17A1Q9UMD9 MIR1255A-201ENST00000408338 113 ntBASIC3.96□□□□□ -1.78
COL17A1Q9UMD9 RNU6-1199P-201ENST00000411249 104 ntBASIC3.96□□□□□ -1.78
COL17A1Q9UMD9 RN7SL636P-201ENST00000497504 294 ntBASIC3.96□□□□□ -1.78
COL17A1Q9UMD9 AC020895.1-201ENST00000595362 272 ntBASIC3.96□□□□□ -1.78
COL17A1Q9UMD9 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
COL17A1Q9UMD9 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.95□□□□□ -1.78
COL17A1Q9UMD9 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL17A1Q9UMD9 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL17A1Q9UMD9 U6atac.2-201ENST00000408644 118 ntBASIC3.95□□□□□ -1.78
COL17A1Q9UMD9 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.95□□□□□ -1.78
COL17A1Q9UMD9 AC016632.1-201ENST00000503994 196 ntBASIC3.95□□□□□ -1.78
COL17A1Q9UMD9 RNU6-781P-201ENST00000516377 101 ntBASIC3.95□□□□□ -1.78
COL17A1Q9UMD9 CR383656.8-201ENST00000549046 145 ntBASIC3.95□□□□□ -1.78
COL17A1Q9UMD9 TP73-AS1.1-201ENST00000611447 161 ntBASIC3.95□□□□□ -1.78
COL17A1Q9UMD9 MIR6134-201ENST00000617606 109 ntBASIC3.95□□□□□ -1.78
COL17A1Q9UMD9 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
COL17A1Q9UMD9 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
COL17A1Q9UMD9 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 SNORD56.1-201ENST00000362913 68 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 RNU6-778P-201ENST00000363269 103 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 RNU6-801P-201ENST00000364087 105 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 Y_RNA.796-201ENST00000364268 102 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 Y_RNA.799-201ENST00000364992 102 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 Y_RNA.355-201ENST00000365462 98 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 SNORA51.5-201ENST00000384126 131 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 MIR518D-201ENST00000385014 87 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 MIR616-201ENST00000385293 97 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 RNU6-1248P-201ENST00000391096 64 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 AC139453.2-201ENST00000487255 133 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 RNU6-970P-201ENST00000516312 107 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 RNU6-155P-201ENST00000516347 100 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 AC090142.3-201ENST00000519012 385 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 CYP4A27P-201ENST00000567218 190 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 U2.21-201ENST00000637295 81 ntBASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
COL17A1Q9UMD9 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.93□□□□□ -1.78
COL17A1Q9UMD9 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.93□□□□□ -1.78
COL17A1Q9UMD9 SNORA31-201ENST00000362607 130 ntBASIC3.93□□□□□ -1.78
COL17A1Q9UMD9 U8.1-201ENST00000362843 134 ntBASIC3.93□□□□□ -1.78
COL17A1Q9UMD9 RNU6-884P-201ENST00000363889 107 ntBASIC3.93□□□□□ -1.78
COL17A1Q9UMD9 RNU6-1107P-201ENST00000364817 104 ntBASIC3.93□□□□□ -1.78
COL17A1Q9UMD9 Y_RNA.319-201ENST00000365138 92 ntBASIC3.93□□□□□ -1.78
COL17A1Q9UMD9 RNU6-1280P-201ENST00000365211 107 ntBASIC3.93□□□□□ -1.78
COL17A1Q9UMD9 Z98749.2-208ENST00000381646 500 ntBASIC3.93□□□□□ -1.78
COL17A1Q9UMD9 MIR487A-201ENST00000385009 80 ntBASIC3.93□□□□□ -1.78
COL17A1Q9UMD9 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.93□□□□□ -1.78
COL17A1Q9UMD9 AC007064.1-201ENST00000412238 351 ntBASIC3.93□□□□□ -1.78
COL17A1Q9UMD9 AC074117.2-201ENST00000417130 397 ntBASIC3.93□□□□□ -1.78
COL17A1Q9UMD9 GPM6BP3-201ENST00000442797 145 ntBASIC3.93□□□□□ -1.78
COL17A1Q9UMD9 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.93□□□□□ -1.78
COL17A1Q9UMD9 AF186996.7-201ENST00000492781 209 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 175.1 ms