Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 RNU6-950P-201ENST00000384651 107 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 AC009161.1-201ENST00000417306 376 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 MTND5P16-201ENST00000460269 1703 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 AC092991.1-201ENST00000477176 376 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 RPS29P25-201ENST00000481709 171 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-718P-201ENST00000516166 105 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 AC093023.1-201ENST00000547375 507 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 EIF1P4-201ENST00000572664 335 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 MIR4778-201ENST00000577635 80 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 MIR4790-201ENST00000577799 79 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 AC013244.2-201ENST00000603396 103 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 AL022345.2-201ENST00000606307 135 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 AL020996.3-201ENST00000606617 222 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 BX284668.6-201ENST00000606899 438 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 SNORD3E-202ENST00000627253 216 ntBASIC0.85□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-623P-201ENST00000363143 105 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 Y_RNA.327-201ENST00000365201 102 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-1013P-201ENST00000384180 107 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 AL355796.1-201ENST00000406706 323 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-1001P-201ENST00000411265 100 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 USP9YP16-201ENST00000430287 407 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 AC092473.1-201ENST00000441098 221 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 STAG3L5P-204ENST00000443759 179 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 USP9YP23-201ENST00000455085 407 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 RPL39P28-201ENST00000465655 155 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 Y_RNA.683-201ENST00000516508 93 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-922P-201ENST00000516753 99 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 Y_RNA.706-201ENST00000516933 99 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 APOOP3-201ENST00000536787 586 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 AC004584.2-201ENST00000570407 410 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 MIR4769-201ENST00000584126 77 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 snoU13.31-201ENST00000607291 104 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 AC093913.1-201ENST00000614178 329 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 AL357075.2-201ENST00000614906 189 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 AC091895.1-201ENST00000624494 256 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 MIR3688-2-201ENST00000636963 87 ntBASIC0.84□□□□□ -2.27
EXOSC4Q9NPD3 RNU6-505P-201ENST00000384427 107 ntBASIC0.83□□□□□ -2.28
EXOSC4Q9NPD3 Y_RNA.573-201ENST00000384763 105 ntBASIC0.83□□□□□ -2.28
EXOSC4Q9NPD3 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
EXOSC4Q9NPD3 USMG5P1-201ENST00000425964 177 ntBASIC0.83□□□□□ -2.28
EXOSC4Q9NPD3 MRPS10P1-201ENST00000448483 130 ntBASIC0.83□□□□□ -2.28
EXOSC4Q9NPD3 SNORD5.1-201ENST00000458800 75 ntBASIC0.83□□□□□ -2.28
EXOSC4Q9NPD3 RNU7-87P-201ENST00000459343 62 ntBASIC0.83□□□□□ -2.28
EXOSC4Q9NPD3 AC018710.1-201ENST00000506509 158 ntBASIC0.83□□□□□ -2.28
EXOSC4Q9NPD3 AC105313.1-201ENST00000509121 353 ntBASIC0.83□□□□□ -2.28
EXOSC4Q9NPD3 RNU6-1114P-201ENST00000516022 107 ntBASIC0.83□□□□□ -2.28
EXOSC4Q9NPD3 AC125232.2-201ENST00000592457 143 ntBASIC0.83□□□□□ -2.28
EXOSC4Q9NPD3 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 Y_RNA.2-201ENST00000362330 96 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 RNU6-874P-201ENST00000362390 105 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 Y_RNA.157-201ENST00000363638 102 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 SNORA20B-201ENST00000384220 132 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 RNU6-1215P-201ENST00000384441 102 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 MIR329-1-201ENST00000385028 80 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 AL034345.1-201ENST00000407768 123 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 AL353997.1-201ENST00000432936 108 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 AC093850.1-201ENST00000454121 251 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 U8.22-201ENST00000459141 133 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 RNU6-329P-201ENST00000459618 107 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 RPL39P38-201ENST00000467018 153 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 MTND5P5-201ENST00000503764 376 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 AC010598.1-201ENST00000510378 103 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 AC026782.1-201ENST00000512952 449 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 AC100812.1-201ENST00000607622 580 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 AC005014.2-201ENST00000607795 599 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 AC073349.3-201ENST00000617616 186 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.82□□□□□ -2.28
EXOSC4Q9NPD3 RNA5SP361-201ENST00000362686 118 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 Y_RNA.86-201ENST00000363020 111 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 Y_RNA.267-201ENST00000364679 109 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 RNU6-407P-201ENST00000365280 104 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 Y_RNA.557-201ENST00000384680 107 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 SNORD116-4-201ENST00000384733 96 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 RNU1-139P-201ENST00000391307 165 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 MIR190B-201ENST00000401119 79 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 ELOCP21-201ENST00000412558 336 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 EIF1P2-201ENST00000428233 350 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 CALM2P4-201ENST00000430810 426 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 UBL5P1-201ENST00000507979 193 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 RNA5SP168-201ENST00000516642 112 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 RNU7-172P-201ENST00000517125 64 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 CYCSP23-201ENST00000519781 313 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 AC018462.2-201ENST00000605375 395 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms